Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001644-TA|BGIBMGA001644-PA|IPR006630|RNA-binding protein
Lupus La, IPR006607|Protein of unknown function DM15
(1490 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 29 0.28
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 27 0.86
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 27 1.1
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 26 2.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 25 3.5
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 25 3.5
AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced prot... 25 4.6
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 24 8.1
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 29.1 bits (62), Expect = 0.28
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 389 DEDNINQSSDSDCENMPNKRTRRCMRFPSSSEDEDGS 425
DE+ IN S+D + PN R+CM P + GS
Sbjct: 568 DEEIINSSNDEGGKTSPNSAVRKCMS-PINGSGASGS 603
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 27.5 bits (58), Expect = 0.86
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 942 LQQTSPPPEQKADSAPDTQEDKKLDSSDDPPLQTEGTEERP 982
+QQ P E+ D D +++ + S + P + +ERP
Sbjct: 75 IQQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSDDERP 115
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 27.1 bits (57), Expect = 1.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 931 ASSDVFTFCFLLQQTSPPPEQ-KADSAPDTQEDKKLDSSDDPPLQTEGTEERPGEKRRKK 989
A + V F ++TSPPPE K D KL D PPL +
Sbjct: 400 ARNVVAPFLIGSRRTSPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQSDSSSSSRSAESP 459
Query: 990 QMVGIFPLA 998
V + P+A
Sbjct: 460 MSVQVDPMA 468
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 75 LIFQE--QERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDKHQ 115
LI QE Q L+ HH H Q+ A D P Q + Q
Sbjct: 132 LIKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQ 174
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle protein
protein.
Length = 138
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 1040 PNVPEFVPQARRQQD-NGSQPGEQPGGRPR 1068
P P P+ +R + N + P E GG+PR
Sbjct: 104 PTAPPIPPEIQRALEWNAAHPEEDDGGQPR 133
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.4 bits (53), Expect = 3.5
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 26 PISDPMNMNYRLIKFKILVISRSEVELKITVNLFSSISCDTKYPNSIMLLIFQ 78
P S ++ L +FK+L + +E+ +T +S ++C+ ++ S+ + Q
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQ 226
Score = 24.2 bits (50), Expect = 8.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 182 SIQKGGYSRLLCEYYFSPDNLARDFFLRRKMSPDGTIPVTLIASF 226
S+ G YSRL CE F + ++L + P G I + SF
Sbjct: 201 SLTTGNYSRLACEIQFV---RSMGYYLIQIYIPSGLIVIISWVSF 242
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 25.4 bits (53), Expect = 3.5
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 26 PISDPMNMNYRLIKFKILVISRSEVELKITVNLFSSISCDTKYPNSIMLLIFQ 78
P S ++ L +FK+L + +E+ +T +S ++C+ ++ S+ + Q
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQ 165
Score = 24.2 bits (50), Expect = 8.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 182 SIQKGGYSRLLCEYYFSPDNLARDFFLRRKMSPDGTIPVTLIASF 226
S+ G YSRL CE F + ++L + P G I + SF
Sbjct: 140 SLTTGNYSRLACEIQFV---RSMGYYLIQIYIPSGLIVIISWVSF 181
>AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced protein
75 protein.
Length = 87
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1125 ELDLPPPRHNTFTDAWSDEESDAEFTDGDVG 1155
E DL PR T + S +SD + +G VG
Sbjct: 6 ECDLATPRTGTNCSSGSSSDSDGQTDEGFVG 36
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 369 APQGNDENSANILSSDEE-----VLDEDNINQ 395
A QG+D +ANI++ D E V+D + NQ
Sbjct: 293 ALQGDDLRTANIIADDPEGVSCLVIDRETFNQ 324
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.316 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,777
Number of Sequences: 429
Number of extensions: 19228
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 18
length of query: 1490
length of database: 140,377
effective HSP length: 67
effective length of query: 1423
effective length of database: 111,634
effective search space: 158855182
effective search space used: 158855182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)
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