Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001644-TA|BGIBMGA001644-PA|IPR006630|RNA-binding protein
Lupus La, IPR006607|Protein of unknown function DM15
(1490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 208 3e-53
At5g66100.1 68418.m08327 La domain-containing protein similar to... 68 6e-11
At4g35890.1 68417.m05097 La domain-containing protein contains P... 55 3e-07
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 51 7e-06
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 51 7e-06
At2g43970.2 68415.m05468 La domain-containing protein contains P... 42 0.004
At2g43970.1 68415.m05467 La domain-containing protein contains P... 42 0.004
At4g35940.1 68417.m05113 expressed protein 40 0.017
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 40 0.017
At1g79880.1 68414.m09333 La domain-containing protein contains P... 38 0.051
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 35 0.48
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp... 34 0.63
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 33 1.9
At1g43770.1 68414.m05040 PHD finger family protein contains Pfam... 33 1.9
At5g55430.1 68418.m06905 hypothetical protein 32 2.5
At4g24680.1 68417.m03533 expressed protein 32 2.5
At4g02485.1 68417.m00337 oxidoreductase, 2OG-Fe(II) oxygenase fa... 32 2.5
At3g50550.1 68416.m05528 expressed protein isoform contains a n... 32 3.4
At2g40780.1 68415.m05031 hypothetical protein 32 3.4
At5g09890.1 68418.m01143 protein kinase, putative contains prote... 31 4.4
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 4.4
At4g15980.1 68417.m02426 pectinesterase family protein contains ... 31 4.4
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 31 5.9
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 5.9
At5g47940.1 68418.m05922 expressed protein 31 7.7
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 31 7.7
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 31 7.7
>At5g21160.1 68418.m02528 La domain-containing protein / proline-rich
family protein contains proline-rich extensin domains,
INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 208 bits (507), Expect = 3e-53
Identities = 144/388 (37%), Positives = 202/388 (52%), Gaps = 45/388 (11%)
Query: 1120 FQLDEELDLP--PPRHN--TFTDAWSDEESDAEFTDGDVGRLLIVTQTTRAAKHDGHDRQ 1175
F LDEELDL PR + + + + E+ D D D+ +L+IVTQ + K DG
Sbjct: 442 FLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKLVIVTQ--NSGKSDGAGIG 499
Query: 1176 GDWTSRTKITQDLEQVITDGLRRYEEDL--------WNDTEYTSVDQQPAGGGKASRPRR 1227
G T I ++L I DGL +E++L N++ + D + G + +
Sbjct: 500 G--TEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKDGKIKSGEGLN--TK 555
Query: 1228 TARFYAASKDPHATDVICSRKHKTRYSLNPPVEHHVGWI-MDVREH-----RPRTQSTGS 1281
AA+ +I SR+ + + + H + ++R + P + S G
Sbjct: 556 LGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIRNNGNISESPPSSSIGF 615
Query: 1282 SLGASP---------TLGSS--C---GSMP------QSLPTFHHPSHGLLRENHFTQQAY 1321
G++P L SS C GS P +S P F HPSH LL EN F Q+ Y
Sbjct: 616 FFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFPPFQHPSHQLLEENGFKQEKY 675
Query: 1322 HKYHSRCLKERKKLGIGQSQEMNTLFRFWSFFLRDHFNRTMYNEFRSLAIEDAQAGFRYG 1381
KY RCL ERKKLG G S+EMN L+RFWS+FLRD F +MY++F+ A+EDA + YG
Sbjct: 676 LKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLSMYDDFQKFALEDAAGNYDYG 735
Query: 1382 LECLFRFYSYGLERKFRPELYQHFQTETMADYEKGQLYGLEKFWAFLKYYKHASALQVEP 1441
LECLFRFYSYGLE+ F +LY+ F+ ++ Y KG LYGLEK+WAF Y + P
Sbjct: 736 LECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGLEKYWAFHHYRGKEEPITKHP 795
Query: 1442 KLQGYL-SKFKSIEDFRVLELLAKTISN 1468
+L+ L +F+SI+DFR E + N
Sbjct: 796 ELEKLLKEEFRSIDDFRAKETITNQKEN 823
Score = 56.0 bits (129), Expect = 2e-07
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 194 EYYFSPDNLARDFFLRRKMSPDGTIPVTLIASFHRVRALTSDVQLVLDAIRDSERLELIS 253
EYYFS +NL D +L M +G +P +IA F RV+A+T DV ++ A+ S +E +
Sbjct: 287 EYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVE-VQ 345
Query: 254 GFKVRTVFEPTKW-PILDVATSSD 276
G ++R + + W P +TS++
Sbjct: 346 GDQIRKRDKWSDWIPASKKSTSAE 369
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 67.7 bits (158), Expect = 6e-11
Identities = 31/66 (46%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Query: 188 YSRLLC--EYYFSPDNLARDFFLRRKMSPDGTIPVTLIASFHRVRALTSDVQLVLDAIRD 245
Y+++L EYYFS DNL+RD LR +M+ +G +PV +IA+F R+ LT+++Q +L+A+R
Sbjct: 336 YNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRS 395
Query: 246 SERLEL 251
SE +E+
Sbjct: 396 SEVVEI 401
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 55.2 bits (127), Expect = 3e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 194 EYYFSPDNLARDFFLRRKMSPDGTIPVTLIASFHRVRALTSDVQLVLDAIRDSERLELIS 253
+YYFS +NL D +LR M+ +G +P+ ++A F +V LT ++Q +++A+++S +E+
Sbjct: 378 QYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQG 437
Query: 254 GF 255
F
Sbjct: 438 DF 439
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 50.8 bits (116), Expect = 7e-06
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 194 EYYFSPDNLARDFFLRRKMSPD--GTIPVTLIASFHRVRALTSDVQLVLDAIRDSERL 249
EYYFS +NL D FL M + G +P++ IA+FH+++ LT D L++ A+++S L
Sbjct: 112 EYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFL 169
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 50.8 bits (116), Expect = 7e-06
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 194 EYYFSPDNLARDFFLRRKMSPD--GTIPVTLIASFHRVRALTSDVQLVLDAIRDSERL 249
EYYFS +NL D FL M + G +P++ IA+FH+++ LT D L++ A+++S L
Sbjct: 112 EYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFL 169
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 41.5 bits (93), Expect = 0.004
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 174 SVNETSKKSIQKGGYSRLL--CEYYFSPDNLARDFFLRRKM--SPDGTIPVTLIASFHRV 229
SV+ SK + + +++ EYYFS NLA L R + P+G +P+ ++ASF ++
Sbjct: 180 SVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKI 239
Query: 230 RALTSDVQLVLDAIRDSERLELI-SGFKVRTV 260
+A+ ++ + +++S +L + G KVR +
Sbjct: 240 KAVINNNSQLAAVLQNSAKLFVSEDGKKVRRI 271
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 41.5 bits (93), Expect = 0.004
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 174 SVNETSKKSIQKGGYSRLL--CEYYFSPDNLARDFFLRRKM--SPDGTIPVTLIASFHRV 229
SV+ SK + + +++ EYYFS NLA L R + P+G +P+ ++ASF ++
Sbjct: 180 SVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKI 239
Query: 230 RALTSDVQLVLDAIRDSERLELI-SGFKVRTV 260
+A+ ++ + +++S +L + G KVR +
Sbjct: 240 KAVINNNSQLAAVLQNSAKLFVSEDGKKVRRI 271
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 39.5 bits (88), Expect = 0.017
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 60 SSISCDTKYPNSIMLLIFQEQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDK 113
S SCD+ NS +L Q++ ++PL+ H + N+ +V+K +PL H +N++
Sbjct: 123 SQNSCDSTL-NSNEMLPKQKEVQQPLDGRHNNNNNEKRVEKQQPLDGRHNNNNE 175
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 39.5 bits (88), Expect = 0.017
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 194 EYYFSPDNLARDFFLRRKMS--PDGTIPVTLIASFHRVRALTSDVQLVLDAIRDSERL 249
EY F+ +L + + + +S P+G +PV+ IAS +++ALTS+ LV A+R S +L
Sbjct: 153 EYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKL 210
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 37.9 bits (84), Expect = 0.051
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 194 EYYFSPDNLARDFFLRRKM--SPDGTIPVTLIASFHRVRAL 232
E+YFS NL D FL R++ S DG + + L+ SF R+R L
Sbjct: 18 EFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNL 58
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 34.7 bits (76), Expect = 0.48
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 194 EYYFSPDNLARDFFLRRKM--SPDGTIPVTLIASFHRVR 230
E+YFS NL D FL++ + S DG + + LI SF ++R
Sbjct: 19 EFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMR 57
>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein weak similarity to
spliceosome-associated-protein 114 [Echinococcus
multilocularis] GI:11602721; contains Pfam profile
PF01805: Surp module
Length = 285
Score = 34.3 bits (75), Expect = 0.63
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 1103 PATDGEV-PDEEPREELHFQ--LDEELDLPPPRHNTFTDA---WSDEESDAEFTDGD 1153
P DG+V P+ E R+ H + L+E D PP RH+ + ++ +D+ SD GD
Sbjct: 8 PDLDGDVDPEAEDRDNFHLEEMLNEWTDEPPIRHDVYPESDGEGADDSSDIHVRRGD 64
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 365 DTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCENMPNKRTRRCMRFPSSSEDEDG 424
D+ G+ S+ + DE+ ++E+ +++S SD + P PS DE
Sbjct: 769 DSSDVEHGHRHKSSKRIKKDEKTVEEETVSKSDQSDLKASPGDNIPYLQNEPSQVSDELR 828
Query: 425 SNVPNQQTEIAADG 438
+ + + DG
Sbjct: 829 AKIRAMLADTLGDG 842
>At1g43770.1 68414.m05040 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 371
Score = 32.7 bits (71), Expect = 1.9
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 349 CSDVESELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDED-NINQSSDSDCENMPNK 407
C D ++ DSD +D + + N ++ +++ VL E ++ +S C P++
Sbjct: 53 CEDCDNSESDSDCNEVDQTVKKKKKSRNQPLVVLAEDNVLQEPLEGSKREESSCSRKPHE 112
Query: 408 RTRRCMRFPSSSEDEDGSNVPNQQT 432
T S E D S+VP+ +
Sbjct: 113 LTCLDGNGESVLEAADSSSVPDHSS 137
>At5g55430.1 68418.m06905 hypothetical protein
Length = 149
Score = 32.3 bits (70), Expect = 2.5
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 943 QQTSPPPEQKADSAPDTQEDKKLDSSDDPPLQTEGTEERPGEKRRKKQMVGIFPLATMGG 1002
Q SP P + D + +++K+ + ++ + E E+ GE KK++ FP + GG
Sbjct: 5 QWYSPVPLSQDDDLEEEEDEKEEEEVEEEEEEEEEEEDEEGEWSLKKKVYVAFPKSFGGG 64
Query: 1003 PLV 1005
LV
Sbjct: 65 FLV 67
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 32.3 bits (70), Expect = 2.5
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 375 ENSANILSSDEEVLDEDNINQSSDSDCENMPNKRTRRCMRFPSSSEDEDGSNVPNQQTEI 434
+NS+++++ DE+ +N + ++ + N RT +SS G + N+ E
Sbjct: 593 QNSSSVVNRDEQESQPRTLNSGNSANKVSARNHRTGHASDSKNSSHYNQGDSATNKNAEP 652
Query: 435 AA-DGTIWTRIEEGGVVGRL-PIHSAFKDVHGPTAHAKRNIMKGN 477
AA GT R GR P + G A K +M G+
Sbjct: 653 AAMGGTSIFRRPTQQTQGRADPQTKRIVNSEGNDAWQKTTVMSGS 697
>At4g02485.1 68417.m00337 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam domain PF03171, 2OG-Fe(II)
oxygenase superfamily
Length = 226
Score = 32.3 bits (70), Expect = 2.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 415 FPSSSEDEDGSNVPNQQTEIAADGTIWTRIEE 446
F SS+DED ++ P ++T D +W R+EE
Sbjct: 12 FGDSSDDEDIADRPGKETIGIGDSAVWERVEE 43
>At3g50550.1 68416.m05528 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 95
Score = 31.9 bits (69), Expect = 3.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 350 SDVESELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSD 400
SD E + D D + D + + + ++E N+ D E ++D + +SDSD
Sbjct: 13 SDEEYDEDDDDDDDTDGESSDEDDEEEDRNLSGDDSESSEDDYTDSNSDSD 63
>At2g40780.1 68415.m05031 hypothetical protein
Length = 171
Score = 31.9 bits (69), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 941 LLQQTSPPPEQKADSAPDTQEDKKLDSSDD----PPLQTEGTEERP 982
+ + T P P +K+ ++D ++DSSDD PPLQ RP
Sbjct: 109 IFKDTRPIPAEKSSPIEQHEDDGEVDSSDDDDGMPPLQANTNRLRP 154
>At5g09890.1 68418.m01143 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 515
Score = 31.5 bits (68), Expect = 4.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 374 DENSANILSSDEEVLDEDNINQSSDSDCENMP 405
D+ +++L D+E+L +D+ NQS SD + P
Sbjct: 251 DDKYSSLLLEDDEMLSQDSENQSGKSDADKAP 282
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.5 bits (68), Expect = 4.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 1026 TSRPGPTPPHDSLDPNVPEFVPQARRQQDNGSQPGEQPGGRPRSAAHSPQAEG 1078
T PG +PP S+ P+ P P + + P PGG P S+ +P G
Sbjct: 442 TPSPGGSPPSPSIVPSPPSTTPSPGSPPTSPTTP--TPGGSPPSSPTTPTPGG 492
>At4g15980.1 68417.m02426 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 701
Score = 31.5 bits (68), Expect = 4.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 948 PPEQKADSAPD---TQEDKKLDSSDDPPLQTEGTEERPGEKRRK 988
P + +D P + E++ LDSS++PP ++ +E RP + RK
Sbjct: 303 PLDDSSDKLPQKSTSSENQPLDSSENPPQKSTSSENRPLDPLRK 346
Score = 31.1 bits (67), Expect = 5.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 944 QTSPPPEQKADSAP---DTQEDKKLDSSDDPPLQTEGTEERPGEKRRKKQM 991
Q SPP E +D +P D+ E++ +DSS + ++ + RP + + +QM
Sbjct: 237 QDSPPNEDSSDDSPSTVDSSENQPVDSSSENQ-SSDSSNNRPLDSSKNQQM 286
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 31.1 bits (67), Expect = 5.9
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 365 DTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCENMPNKRTRRCMRFPSSSEDE 422
D+ G+ S+ + DE+ ++E+ +++S SD + P PS DE
Sbjct: 769 DSSDVEHGHRHKSSKRIKKDEKTVEEETVSKSDQSDLKASPGDNIPYLQNEPSQVSDE 826
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 31.1 bits (67), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 78 QEQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDKHQD 116
Q + EEHHQH + + E +HH + KH++
Sbjct: 572 QHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEE 610
>At5g47940.1 68418.m05922 expressed protein
Length = 749
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 372 GNDENSANILSSDEEVLDEDNINQSSDSDC----ENMPNKRT 409
G DE + ++S + LDE+ + S+ +DC EN+ K T
Sbjct: 575 GGDEEAETVVSVSDNALDEETVTSSTKADCYTERENLSYKPT 616
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 30.7 bits (66), Expect = 7.7
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 7/145 (4%)
Query: 1036 DSLDPNVPEF--VPQARRQQDNGSQPGEQPGGRPRSAAHSPQAEGGAADWTEVKRRTKAG 1093
D P V +F V + Q NG + G G + A+ + + D+ + +T G
Sbjct: 260 DDSSPKVKKFMKVILGKLQAGNGEEGGLM-GMLGKLASGFLEGKLNDEDYVKPAMQTHVG 318
Query: 1094 SRERSAAGGPATDGEVPDEEPREELHFQLDE-ELDLPPPRHNTFT-DAWSDE-ESDAEFT 1150
S+E AGG +PD Q D+ D P T A S+ ++ E T
Sbjct: 319 SKEEVYAGGSRGSVPLPDSGILIS-GCQTDQTSADATPAGKPTEAYGAMSNSIQTILEET 377
Query: 1151 DGDVGRLLIVTQTTRAAKHDGHDRQ 1175
DG++ +VT+ +A K G +Q
Sbjct: 378 DGEISNREMVTRARKALKKQGFTQQ 402
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 30.7 bits (66), Expect = 7.7
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 640 ASDVETKYVVNGFPYLGKDETRNASTPLSEFVVMKLLEPYTMKGRTVTTDNFFTSIPLAL 699
+SD E K++ F + E + S+P +E +++ L P+ + + D +FT+ LA
Sbjct: 1024 SSDSEEKWIAMSFLAVMSQEPKVVSSPATE-NILQTLAPFMQSEQMI--DGYFTAQVLAA 1080
Query: 700 KLRSKSTSLLGTI 712
+R K+ + I
Sbjct: 1081 LVRHKNDKTISEI 1093
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,412,027
Number of Sequences: 28952
Number of extensions: 1558724
Number of successful extensions: 4799
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4749
Number of HSP's gapped (non-prelim): 55
length of query: 1490
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1400
effective length of database: 9,464,880
effective search space: 13250832000
effective search space used: 13250832000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)
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