Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001643-TA|BGIBMGA001643-PA|undefined
(404 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 38 0.063
AB209034-1|BAD92271.1| 713|Homo sapiens Paxillin variant protein. 33 1.8
Y09615-1|CAA70830.1| 399|Homo sapiens mTERF protein. 33 2.4
BC130391-1|AAI30392.1| 399|Homo sapiens mitochondrial transcrip... 33 2.4
BC130389-1|AAI30390.1| 399|Homo sapiens mitochondrial transcrip... 33 2.4
BC108648-1|AAI08649.1| 399|Homo sapiens mitochondrial transcrip... 33 2.4
BC000965-1|AAH00965.1| 399|Homo sapiens mitochondrial transcrip... 33 2.4
AK222730-1|BAD96450.1| 399|Homo sapiens mitochondrial transcrip... 33 2.4
AC003086-1|AAB83941.1| 399|Homo sapiens mitochondrial transcrip... 33 2.4
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 32 3.1
U90661-1|AAB50242.1| 1441|Homo sapiens steroid receptor coactiva... 31 7.2
BC127886-1|AAI27887.1| 581|Homo sapiens C8ORFK36 protein protein. 31 9.6
AB196636-1|BAE53438.1| 581|Homo sapiens C8orfK36 protein protein. 31 9.6
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 37.9 bits (84), Expect = 0.063
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 24 GEDNEMASSREIVSHDLNSSTPEPPNSFNDASNISLPTNNNVPSVSLSRSIQTRIAS-DS 82
G + +SSR I+S + SS+ P+S + +S+ S +++ PS S S S + +S S
Sbjct: 34 GSRSSSSSSRSILSSSILSSSI--PSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSS 91
Query: 83 PNTSTTKTRINQPQSLFIQALTKLNEDSVKFTVINIIKTQQEMAKMALNDDQHTLSAPDS 142
P++S++ + + P S + + + S + + + + + + S+P S
Sbjct: 92 PSSSSSSSSSSSPSS--SNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSS 149
Query: 143 LMSAPPSYSFVLRQIAARPRTRFMGTFIPSPSFIQHTPPPNYASAFDVYVDNPMPRPS 200
S+P S S ++ P + + SPS ++ P + +S+ +P PR S
Sbjct: 150 SSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPS-SSNSSPSSSSSSPSSSSSSPSPRSS 206
>AB209034-1|BAD92271.1| 713|Homo sapiens Paxillin variant protein.
Length = 713
Score = 33.1 bits (72), Expect = 1.8
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 66 PSV-SLSRSIQTRIASDSPNTSTTKTRINQPQSLF-IQALTKLNEDSVKFTVINIIKTQQ 123
PSV SL +++ + S P + + ++ PQ + Q T+++ S + ++ +
Sbjct: 222 PSVESLLDELESSVPSPVPAITVNQGEMSSPQRVTSTQQQTRISASSATRELDELMAS-- 279
Query: 124 EMAKMALNDDQHTLSAPDSLMSAPPSYSFVLRQIAARPRTRFMGTFIPSPSFIQHTP 180
++ + LSAP SAP SY + P T IPSP HTP
Sbjct: 280 -LSDFKTSSSTVALSAPGLSSSAPSSYCSLPPSPPPMPSVFLPPTTIPSPRGQGHTP 335
>Y09615-1|CAA70830.1| 399|Homo sapiens mTERF protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>BC130391-1|AAI30392.1| 399|Homo sapiens mitochondrial
transcription termination factor protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>BC130389-1|AAI30390.1| 399|Homo sapiens mitochondrial
transcription termination factor protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>BC108648-1|AAI08649.1| 399|Homo sapiens mitochondrial
transcription termination factor protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>BC000965-1|AAH00965.1| 399|Homo sapiens mitochondrial
transcription termination factor, precursor protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>AK222730-1|BAD96450.1| 399|Homo sapiens mitochondrial
transcription termination factor precursor variant
protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>AC003086-1|AAB83941.1| 399|Homo sapiens mitochondrial
transcription terminator factor protein.
Length = 399
Score = 32.7 bits (71), Expect = 2.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 REIVSHDL---NSSTPEPPNSFNDASNISLPTNNN-VPSVSLSRSIQTRIASDSPNTSTT 88
R+IV+ DL N P + F +N++L N + SV L+R R+ +++P T +
Sbjct: 147 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN 206
Query: 89 KTRINQPQSLFIQA 102
+N+ F+QA
Sbjct: 207 SLDLNKQMVEFLQA 220
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 32.3 bits (70), Expect = 3.1
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 30 ASSREIVSHDLNSSTPEPPNSFNDASNISLPTNNNVPSVSLSRSIQTRIASDSPNTSTTK 89
+SS S +SST P +S + +S+ +N++ S S S S + +S SP++S++
Sbjct: 75 SSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSS 134
Query: 90 TRINQPQSLFIQALTKLNEDSVKFTVINIIKTQQEMAKMAL-NDDQHTLSAPDSLMSAPP 148
+ S + + + S + + + + + + + S+P S S+P
Sbjct: 135 PSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPS 194
Query: 149 SYSFVLRQIAARPRTRFMGTFIPSPSFIQHTPP 181
S S ++ P + T PS S + P
Sbjct: 195 SSSSSPSPRSSSPSSSSSSTSSPSTSSPSSSSP 227
>U90661-1|AAB50242.1| 1441|Homo sapiens steroid receptor
coactivator-1 protein.
Length = 1441
Score = 31.1 bits (67), Expect = 7.2
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 55 SNISLP-TNNNV-PSVSLSRSIQTRIASDSPNTSTTKTRINQPQSLFIQALTKLNEDSVK 112
S +S+P N +V PS+S + + N++ TRIN+ QS + + + N + +
Sbjct: 379 SGMSIPRVNPSVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHSNSSNSQ 438
Query: 113 FTVINIIKTQQEMAKMALNDDQHT--LSAPDSLMSAPP--SYSFVLRQIAARPRTRFMGT 168
+ Q +A +ALN Q + S P ++ PP L Q + PR +
Sbjct: 439 GS-FGCSPGSQIVANVALNKGQASSQSSKPSLNLNNPPMEGTGISLAQFMS-PRRQVTSG 496
Query: 169 FIPSPSFIQHTPPPNYAS 186
P ++ PPN ++
Sbjct: 497 LATRPRMPNNSFPPNIST 514
>BC127886-1|AAI27887.1| 581|Homo sapiens C8ORFK36 protein protein.
Length = 581
Score = 30.7 bits (66), Expect = 9.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 135 HTLSAPDSLMSAPPSYSFVLRQIAARPRTRFMGTFIPSPSFIQHTPPPN 183
H A D+L+ + P+ +L + A R GT +P + H PP N
Sbjct: 233 HHFIANDALLQSSPACQIIL-ETAKRQMFSLCGTTVPDCKLLLHVPPRN 280
>AB196636-1|BAE53438.1| 581|Homo sapiens C8orfK36 protein protein.
Length = 581
Score = 30.7 bits (66), Expect = 9.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 135 HTLSAPDSLMSAPPSYSFVLRQIAARPRTRFMGTFIPSPSFIQHTPPPN 183
H A D+L+ + P+ +L + A R GT +P + H PP N
Sbjct: 233 HHFIANDALLQSSPACQIIL-ETAKRQMFSLCGTTVPDCKLLLHVPPRN 280
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,197,548
Number of Sequences: 224733
Number of extensions: 2863057
Number of successful extensions: 8154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8145
Number of HSP's gapped (non-prelim): 23
length of query: 404
length of database: 73,234,838
effective HSP length: 92
effective length of query: 312
effective length of database: 52,559,402
effective search space: 16398533424
effective search space used: 16398533424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 66 (30.7 bits)
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