GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001643-TA|BGIBMGA001643-PA|undefined
         (404 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.12 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.87 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   2.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 0.12
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 8   VSTQFGSNCEQVENRIGEDNEMASSREIVSHDLNSSTPEPPNSFNDASNISLPTNNNVPS 67
           V+T +GS+ E++ N   ++    S    V   ++       +    A N+S  +NN    
Sbjct: 561 VATMYGSD-EEIINSSNDEGGKTSPNSAVRKCMSPINGSGASGSGSAENLSSGSNN---- 615

Query: 68  VSLSRSIQTRIASDSPNTSTTKTRINQPQSLFIQALTKLNEDSVKFTVI 116
                  QT  AS    ++TT     +P +L    L + NED  K  ++
Sbjct: 616 -------QTSSASRENTSNTTSMESFKPPTLTESLLNRHNEDMEKLMML 657


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.87
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 42  SSTPEPPNSFNDASNISLPTNNNVPSVSLSRSIQTRIASDSPNTSTTKTRINQPQSLFIQ 101
           ++T +P  S       S   N N   V+  +S+     + + NT TT        ++ I 
Sbjct: 798 ATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPIT 857

Query: 102 AL----TKLNEDSVKFTVINIIKTQ 122
           +L    T +N  +V+  VIN +KTQ
Sbjct: 858 SLPASSTSINSITVEKDVINDVKTQ 882


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 32  SREIVSHDLNSSTPEPPNSFNDASNISLPTNNNVPSVSLSRSIQTRIASDSPNTSTTKTR 91
           SR   S D  ++  +  +S N  +  S P+  N+PSV +    +  I S +   ST+  +
Sbjct: 359 SRSWSSLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKIDEDQKCSIESITSVNSTSSPK 418


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 343 HGRRPGKNRRDRERKAPPRAHKTPQQ 368
           HG +  KN+ D +  A PR  K P Q
Sbjct: 209 HGNKKKKNKEDEDDGATPR--KAPPQ 232


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 7   NVSTQFGSNCEQVENRIGEDNEMASSREIVSHDLNSSTPEPP 48
           +++TQ  S    V     E+   +   E V+ DL+   P PP
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSPSVQHEFVTFDLDEPLPPPP 379


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 52  NDASNISLPTNNNVPSVSLSRSIQTRIASDSPNTSTTKTRINQPQSLFIQALTKLNE 108
           N    +  P   N P +SL  S + R    +PN S   T I Q ++  I   T  +E
Sbjct: 485 NTIQGLPPPYRLNKPLMSLITSSEVRQPGKAPNYSVNWT-IGQLEAEVINCTTGKDE 540


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 233 THMCAFILCLFCCW 246
           T +  +ILC FC W
Sbjct: 179 TLLLVWILCYFCIW 192


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,218
Number of Sequences: 429
Number of extensions: 6611
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 404
length of database: 140,377
effective HSP length: 59
effective length of query: 345
effective length of database: 115,066
effective search space: 39697770
effective search space used: 39697770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)