GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001642-TA|BGIBMGA001642-PA|IPR001930|Peptidase M1,
membrane alanine aminopeptidase
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    62   2e-10
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   6.7  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   8.8  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    27   8.8  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 24  DIESATDELSLHKGAAIVSMAIEAAGEETGXXXXXXXXXDHRYASADARDLWRALQRDNP 83
           +I    D +S  KG+ ++ M  +  GE+T           HRY +    DLW AL  ++ 
Sbjct: 392 EINQIFDAISYSKGSCVIRMVSKYVGEDTFIKGIQKYISKHRYGNTVTEDLWAALSAESG 451

Query: 84  DDASVQAHAWDGWCEKPGYPLLSATTVGD-DVILKQERF 121
            D S   H    W +K GYP+LS +   D +++++Q RF
Sbjct: 452 QDISSTMH---NWTKKTGYPVLSVSETNDGELLIEQHRF 487


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 483 ALVDSYSAPRPTYSHRALLAALASPEDDWLFYRFAFTVLSTE 524
           A+ + YS+P  T   +A + AL +PED   FY+  F+ +  E
Sbjct: 274 AVDNKYSSPPQTIDPQANIKALITPEDRSNFYQL-FSKIDNE 314


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/45 (22%), Positives = 25/45 (55%)

Query: 239 LGDTGMLQIVLHPNAMIRRYDIGNETKPLQTSRWTENTTHLVWMN 283
           LG+     ++ H ++ +R   + NE+ P+++  +   T  ++WM+
Sbjct: 371 LGEVPDFHLLFHCSSDVRILQVVNESMPIKSEFFILTTESVLWMD 415


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 210 EEIHTMHNGTWIAVIVGNWPWPSAELSPRLGDTG 243
           EE+HT+H+     +IV   PW + +L P L  +G
Sbjct: 193 EELHTIHSMEATHIIVAAGPW-TPQLIPNLRISG 225


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,241
Number of Sequences: 5004
Number of extensions: 73483
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 4
length of query: 544
length of database: 2,362,478
effective HSP length: 76
effective length of query: 468
effective length of database: 1,982,174
effective search space: 927657432
effective search space used: 927657432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)