GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001642-TA|BGIBMGA001642-PA|IPR001930|Peptidase M1,
membrane alanine aminopeptidase
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                57   4e-08
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   46   6e-05
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 46   8e-05
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)                       40   0.005
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 36   0.083
SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)            31   1.8  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)                       30   5.5  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   7.2  

>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 56.8 bits (131), Expect = 4e-08
 Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 8/216 (3%)

Query: 297  WIRYNVGARGLYRVAPQDRAGEEASDAARV-YDGASAAERALILDDAFVLSRAGRLPASX 355
            WI+ N    G YRV       E         ++  SAA+RA +LDDAF L+RAG LP + 
Sbjct: 854  WIKANYEQHGFYRVNYDAENWERLKQQLDTDHEKLSAADRAGLLDDAFNLARAGELPLTT 913

Query: 356  XXXXXXXXXGEQHWAPWRVVLSHMSWWXXXXXXXXXXXXXXXXXXXXHPPIALRHQRDAD 415
                      E+ + PW   LS+M +                          +R     D
Sbjct: 914  ALDLTKYLTKEEMYVPWAAALSNMGFLESRLCENEEHMTLYKKYALQQLIPIVRKLGWDD 973

Query: 416  SDDHL--WLRGALLASGVEWGNQGITNEAVQLFDLWMEKNHTIPEIYQEAAFTAGVRTHG 473
               HL  +LR  +L     +G+          F  WM +  ++P   +   +  GV   G
Sbjct: 974  KGSHLQKYLRSYVLKLCARYGDVECATAVKSRFADWM-RGESLPPNLRSVIYDTGVHLGG 1032

Query: 474  RVAWRACWRALVDSYSAPRPTYSHRALLAALASPED 509
                   ++ + + Y+        R LL A+++ ++
Sbjct: 1033 EKE----FKYMYEQYNKSTVAAEKRKLLFAMSATQN 1064



 Score = 51.6 bits (118), Expect = 2e-06
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 2   LTLRLDSGSTVRAFAALRLERADIESATDELSLHKGAAIVSMAIEAAGEETGXXXXXXXX 61
           L++ LD  S     + +  + A+I S  D +S  KGAAI+ M     G++          
Sbjct: 669 LSMNLDQLSNSHPISVVVKDPAEINSLFDTISYDKGAAIIRMLKSFLGDDVFQKGLQKYL 728

Query: 62  XDHRYASADARDLWRALQRDNPDDASVQAH------AWDGWCEKPGYPLLSATTVGDDVI 115
             H++ +A+   LW A   ++   AS   +        D W  + G+P+++    GD  +
Sbjct: 729 NKHKFGNAETNQLWDAFTEESSVSASSTKNFRDVKSVMDTWTLQMGFPVVTIKQRGDSAV 788

Query: 116 LKQERF 121
             Q+ F
Sbjct: 789 ASQKHF 794


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 22/234 (9%)

Query: 286 EMVIPDLGKHKWIRYNVGARGLYRVAPQDRAGEE-ASDAARVYDGASAAERALILDDAFV 344
           E+ IP L K  W++ N    G YRV   D       +   + ++  ++ +R+ +L+DAF 
Sbjct: 16  EIQIPPLDKG-WVKGNYQQIGYYRVHYDDNNWRALVAQLNQDHEVFTSQDRSSLLNDAFS 74

Query: 345 LSRAGRLPASXXXXXXXXXXGEQHWAPWRVVLSHMSWWXXXXXXXXXXXXXXXXXXXXHP 404
           L+RAG L              E+ + PW+  L+ +S+                     + 
Sbjct: 75  LARAGYLKYDIAMSMLIYLDKERSYVPWKTALNALSY---------------LKTVLANR 119

Query: 405 PIALRHQRDADSDDHLWLRGALLASGVEWGNQGITNEAVQLFDLWME-KNHTIPEIYQEA 463
           P     Q     +   +LRGA+L S    G       A ++F  W   +  +I    +  
Sbjct: 120 PSYGNLQSCPKYNRFRYLRGAILGSACSVGLPEAVGNASRIFKEWQTGERASISVDLRSI 179

Query: 464 AFTAGVRTHGRVAWRACWRALVDSYSAPRPTYSHRALLAALASPEDDWLFYRFA 517
            +  G+   G   W   W  +   Y A        +LL AL   +  W+  ++A
Sbjct: 180 VYRYGIAATGPDEWD--W--MFARYQASMDASEKISLLEALGHSKQTWILNKYA 229


>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 23  ADIESATDELSLHKGAAIVSMAIEAAGEETGXXXXXXXXXDHRYASADARDLWRALQRDN 82
           A+I    D +S +KG+ I+ M  +  GE             H Y +A+  DLW+AL+ ++
Sbjct: 573 AEINEIFDSISYNKGSCILRMLEDFLGENKFKKGLTRYLKRHAYGNAETDDLWKALKEES 632

Query: 83  PDDASVQAHAWDGWCEKPGYPLL 105
             D        D W  + GYP++
Sbjct: 633 GQDVK---GVMDTWTLQMGYPVV 652


>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
          Length = 369

 Score = 39.9 bits (89), Expect = 0.005
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 296 KWIRYNVGARGLYRVAPQDRAGEEASDAARV-YDGASAAERALILDDAFVLSRAGRLPAS 354
           KWI+ NV  +G YRV   +   ++        +      +R+ ++DD+F L+R+G L  +
Sbjct: 48  KWIKANVEQKGYYRVNYDEENWKQLIKQLNSDHKVFHQTDRSGLIDDSFALARSGLLKLT 107

Query: 355 XXXXXXXXXXGEQHWAPWRVVLSHMSW 381
                      E+ + PW   L ++ +
Sbjct: 108 TALDLTSYLHNERDYIPWSSALGNLGF 134


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 35.9 bits (79), Expect = 0.083
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 24  DIESATDELSLHKGAAIVSMAIEAAGEETGXXXXXXXXXDHRYASADARDLWRALQRDNP 83
           +I    D +S  KGA ++ M     G +T           H Y +A+  DLW + ++ + 
Sbjct: 385 EIGEIFDAISYSKGATVLRMLEYIIGNDTFIDGLRRYLKTHAYGNANTDDLWESFRQASC 444

Query: 84  DDASV--QAHAWDGWCEKPGYPLL 105
              S     +  D W  + GYP++
Sbjct: 445 TRGSCVDVKYIMDTWTLQMGYPVV 468


>SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)
          Length = 287

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 63  DHRYASADARDLWRALQRDN-PDDASVQA-HAWDGWCEKPGYPLLSATTV-GDDVILKQE 119
           +H Y SA   DLW AL  ++   D+ V   +  D W  + G+P++S     G    + Q 
Sbjct: 172 EHVYGSAQTDDLWNALTEESCRRDSCVDVKNVMDTWTLQMGFPVVSIKRQNGTHFSVTQS 231

Query: 120 RF 121
           RF
Sbjct: 232 RF 233


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 273 TENTTHLVWMNDTEMVIPDLGKHKWIR 299
           TEN T +V  N TE++I DL +  W R
Sbjct: 754 TENQTEIVSPNATEIIIKDLERFSWYR 780


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 289 IPDLGKHKWIRYNVGARGLYRVAPQDRAGEEASDAARVYDGASAA 333
           IP+ G   ++ ++  A GLYR     RA     D AR+ DG S A
Sbjct: 691 IPEKGLIVYLDFDGEAAGLYRRMDISRAPGVCGDVARMRDGGSVA 735


>SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)
          Length = 193

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 66  YASADARDLWRALQRDNPDDASV--QAHAWDGWCEKPGYPLLSATTVGDD-VILKQERF 121
           Y +ADA DLW+ L+  +    S        D W  + G+P++S    G     + Q+RF
Sbjct: 32  YGNADAEDLWKVLRNASCATGSCVDVKKMMDTWTLQMGFPVVSVKRDGSSKYSVSQKRF 90


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 498 RALLAALASPEDDWLFYRFAFTVLSTEAQR 527
           + L+A LA+ ED+  F+ F F V+ T+ +R
Sbjct: 686 KLLIARLATEEDELKFFAFKFAVMLTDEER 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,825,155
Number of Sequences: 59808
Number of extensions: 596112
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 14
length of query: 544
length of database: 16,821,457
effective HSP length: 86
effective length of query: 458
effective length of database: 11,677,969
effective search space: 5348509802
effective search space used: 5348509802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)