GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001641-TA|BGIBMGA001641-PA|IPR001930|Peptidase M1,
membrane alanine aminopeptidase
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    72   1e-12
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    32   1.1  
At5g60310.1 68418.m07559 lectin protein kinase, putative similar...    31   1.9  
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    31   1.9  
At4g36440.1 68417.m05176 expressed protein                             31   2.6  
At1g26380.1 68414.m03218 FAD-binding domain-containing protein s...    30   3.4  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    30   4.5  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 9/154 (5%)

Query: 204 TGEVSIDLKVDRDTTFVVLNVRDMNVTERALFKSGGSLGPKIS--RVLDYPQADQTYIEF 261
           TG V+IDL +  DT F+VLN  D++V + ++  +  S    ++  +V+ + + +   +EF
Sbjct: 33  TGTVAIDLDIVADTRFIVLNAADLSVNDASVSFTPPSSSKALAAPKVVLFEEDEILVLEF 92

Query: 262 KEKIRRKYNYTLSLRFITRLERSDKQRGFFLT----GNQRHRCAVSRFWLTHARSTFPCF 317
            E +       L L F   L  +DK +GF+ +      ++   AV++F    AR  FPC+
Sbjct: 93  GEILPHGVG-VLKLGFNGVL--NDKMKGFYRSTYEHNGEKKNMAVTQFEPADARRCFPCW 149

Query: 318 DEPNLRASFKLTIVRDRFHVSLTNMPIVATEEAG 351
           DEP  +A+FK+T+      V+L+NMPI+  +  G
Sbjct: 150 DEPACKATFKITLEVPTDLVALSNMPIMEEKVNG 183



 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 14/96 (14%)

Query: 433 KTIQQFSYELNTSYPLPKFDVVVV-DSANHYSEGWGLITLAPATL---------SDTKTI 482
           KT+  F       YPLPK D++ + D A    E +GL+T     L         S+ + +
Sbjct: 242 KTLDLFKEYFAVPYPLPKMDMIAIPDFAAGAMENYGLVTYRETALLYDEQHSAASNKQRV 301

Query: 483 ARL----LAQQWFGGLVSPRWWASQWLMEALTSLIA 514
           A +    LA QWFG LV+  WW   WL E   + ++
Sbjct: 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVS 337


>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 110 PCAEETTLIVGQPPTDADNVASSA--NKERIASNGAVFP---WRGARLPTFVIPKHYSL 163
           P   E  +++ +  T+  ++ +    NKE  +S+G +F    W G +LP  +IP H+ L
Sbjct: 397 PDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGGKLPPVMIPNHFVL 455


>At5g60310.1 68418.m07559 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 616

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 418 PSILQESGPLLEWLQK---TIQQFSYELNTSYPLPKFDVVVVDSANHYS 463
           P +  E   L+EW+ +   T++Q    LN + PLP F    V  +NH S
Sbjct: 544 PQLQLEKQILIEWVPESRPTMEQVILYLNQNLPLPDFSPYTVGISNHSS 592


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 478 DTKT-IARLLAQQWFGGLVSPRWWASQWLMEALTSLIAE 515
           DT+  +A  LA+QWFG  ++P      WL++ L   + +
Sbjct: 346 DTRIKLASALAKQWFGVYITPESPNDDWLLDGLAGFLTD 384


>At4g36440.1 68417.m05176 expressed protein
          Length = 394

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 412 SLYTDHPSILQESGPLLEWLQKTIQQFSYELNTSYPLPKFDVV 454
           SL  +HP+ L  S  +L+W  +  ++  YE+N + P+  +D V
Sbjct: 233 SLTGNHPTTLSPSTLVLDWNCEKSRRTPYEVNVTIPVDGYDPV 275


>At1g26380.1 68414.m03218 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 535

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 136 ERIASNGAVFPWRGARLPTFVIPKHYSLWLHPNLTTGEL 174
           +RI SN   FP R   L  F + ++Y+ WL PN T   L
Sbjct: 410 DRIPSNATAFPHRKGNL--FKV-QYYTTWLDPNATESNL 445


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 248 VLDYPQADQTYIEFKEKIRRKYNYTLSLRFITRLERSDKQRGFFLTGNQRHRCAVSRFWL 307
           +L  P ADQ  IE   ++   +++ + L      +    +RG  L+G Q+ R A++R  L
Sbjct: 465 LLGRPDADQVEIEEAARVANAHSFIIKLP--DGFDTQVGERGLQLSGGQKQRIAIARAML 522


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,272
Number of Sequences: 28952
Number of extensions: 471095
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 11
length of query: 541
length of database: 12,070,560
effective HSP length: 85
effective length of query: 456
effective length of database: 9,609,640
effective search space: 4381995840
effective search space used: 4381995840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)