Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001640-TA|BGIBMGA001640-PA|IPR000994|Peptidase M24,
catalytic core
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   188   6e-49
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    46   8e-06
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    37   0.004
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   5.2  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  188 bits (459), Expect = 6e-49
 Identities = 105/256 (41%), Positives = 141/256 (55%), Gaps = 16/256 (6%)

Query: 1   MGPSFSTIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNS 60
           MG SF TI+  G NGA+IHYSP + G   +I    + L DSG QYKDGTTD+TRT H   
Sbjct: 359 MGLSFETISSTGPNGAVIHYSPPATG-SAIIDPTKIYLCDSGAQYKDGTTDVTRTWHFGE 417

Query: 61  SPTPEQRRAFTRVMKGQIALGTAVLPAGILGHTIEVLARKALWDIGLNYXXXXXXXXXXY 120
            P+  +R+  T  +KG IAL   V P G  G+ I+VLAR+ LW  GL+Y          +
Sbjct: 418 -PSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQYLWKYGLDYLHGTGHGVGSF 476

Query: 121 LNVHEAPAWILSAVSVDDPGIRPNMIYSNEPGYYEVGEYGIRHEDLVQTIEMNSSADHVL 180
           LNVHE P  I S    +   ++  M+ SNEPG+YE G +G R E+ V   E+N+      
Sbjct: 477 LNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYEDGHFGYRVENCVYITEVNTE----- 531

Query: 181 ADGIIGDFDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQR 240
                  F GR  +    ++LAPH    +D +LL+  E+KYLN YH+ V TTL P+L   
Sbjct: 532 -----NRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLSV- 585

Query: 241 GYNDVLEWLTDECAPI 256
                 +WL+   +PI
Sbjct: 586 ---SAKKWLSKHTSPI 598


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 4   SFSTIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPT 63
           ++  +   G+NG  IHY+  ++    +   D+MVLVD+GG++    TDI+RT  +N   +
Sbjct: 285 AYVPVVAGGKNGLTIHYTINND----IFRPDEMVLVDAGGEFGGYVTDISRTWPINGKFS 340

Query: 64  PEQRRAFTRVMKGQ 77
             QR  +  V+  Q
Sbjct: 341 TVQRDLYQAVLNVQ 354


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 6   STIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPTPE 65
           S I   GE  A+ H  P +    R + K + VL+D G       +D TRT   +     E
Sbjct: 275 SPIVLFGERAAMPHGGPSN----RRLKKSEFVLMDVGTTLFGYHSDCTRTVLPHGQKMTE 330

Query: 66  QRRAFTRVMKGQIALGTAVLP--AGILGHTIEVLARKALWDIGLNYXXXXXXXXXXYLNV 123
           +      ++      G  +L   +      +++ ARK + D G  Y           L +
Sbjct: 331 RMEKLWNLVYDAQTAGIQMLSHLSNTSCAEVDLAARKVIKDAG--YGEYFIHRLGHGLGL 388

Query: 124 HEAPAWILSAVSVDDPGIRPNMIYSNEPGYYEVGEYGIRHEDLV 167
            E     L+  +   P ++   +++ EPG Y   E GIR ED V
Sbjct: 389 EEHEQTYLNPANKGTP-VQKGNVFTVEPGIYIPDEIGIRIEDAV 431


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 51  DITRTRHMNSSPTPEQRRAFTRVMKGQIALGTAVLPAGILGHTIEVLARK-ALWDIG 106
           +++RT+++  +     + +F +    +++   A  P GIL  T ++ ++K A W +G
Sbjct: 48  NLSRTKNLFLNDCKFNKNSFEKFFARRLSNSVAPTPGGILQETEKIPSKKVAFWLLG 104


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,288
Number of Sequences: 5004
Number of extensions: 49577
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 4
length of query: 280
length of database: 2,362,478
effective HSP length: 72
effective length of query: 208
effective length of database: 2,002,190
effective search space: 416455520
effective search space used: 416455520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)