GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001640-TA|BGIBMGA001640-PA|IPR000994|Peptidase M24,
catalytic core
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   4e-08
SB_29090| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_42186| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)               34   0.11 
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)                 31   0.80 
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               31   1.4  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             29   5.6  
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)                   28   7.4  

>SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 1   MGPSFSTIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYK 46
           MGPSF +I G G N AIIHYSP  +   R IT D  +L+D+G QYK
Sbjct: 78  MGPSFFSIVGYGPNAAIIHYSPTKDS-DRQITTDSTLLIDTGSQYK 122


>SB_29090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 47  DGTTDITRTRHMNSSPTPEQRRAFTRVMKGQIALGTAVLPAGILGHTIEVLARKALWDIG 106
           DGTTD+TRT H       EQ    TR +       T  +  G++ +T ++L    L    
Sbjct: 2   DGTTDVTRTVHFGKPTRYEQ--VDTRQILYMKLRQTYKIRTGVI-YTRQILCLAKLQTAA 58

Query: 107 LNYXXXX----XXXXXXYLNVHEAPAWILSAVSVDDPGIRPNMIYSNEPGYYEVGEYGIR 162
             +              + N    P  I      D+  +   M  S EPGYYE G +GIR
Sbjct: 59  ECFTRVFKGHVSLAMTVFPNKTTGPQGINLRARPDEAPLEAGMTTSIEPGYYEDGNFGIR 118

Query: 163 HED--LVQTIEM 172
            E+  +++ +E+
Sbjct: 119 IENVYIIKPVEL 130


>SB_42186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 47  DGTTDITRTRHMNSSPTPEQRRAFTRVMKGQIALGTAVLPAGILGHTIEVLARKALWDIG 106
           DGTTD+TRT H       EQ    TR +       T  +  G++ +T ++L    L    
Sbjct: 2   DGTTDVTRTVHFGKPTRYEQ--VDTRQILYMKLRQTYKIRTGVI-YTRQILCLAKLQTAA 58

Query: 107 LNYXXXX----XXXXXXYLNVHEAPAWILSAVSVDDPGIRPNMIYSNEPGYYEVGEYGIR 162
             +              + N    P  I      D+  +   M  S EPGYYE G +GIR
Sbjct: 59  ECFTRVFKGHVSLAMTVFPNKTTGPQGINLRARPDEAPLEAGMTTSIEPGYYEDGNFGIR 118

Query: 163 HED--LVQTIEM 172
            E+  +++ +E+
Sbjct: 119 IENVYIIKPVEL 130


>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 29  RVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPTPEQRRAFTRVMKGQ 77
           +V+   D+VL+DSG +Y    +DITRT  +N + T  QR  +  V++ Q
Sbjct: 337 QVLRDGDLVLMDSGCEYHGYASDITRTWPVNGTFTGPQRELYDIVLEVQ 385


>SB_19426| Best HMM Match : Calx-beta (HMM E-Value=3e-06)
          Length = 631

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 7   TIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPTPEQ 66
           TI    +   +I +S +S GP   +  DD +       ++DG T+     ++     PE 
Sbjct: 131 TILANDKGFGVIGFSKVSSGPS--LGTDDFITTSGTVSFQDGQTEANLVLNIKPDDVPEN 188

Query: 67  RRAFTRVMKGQIALGTAVLPAGILGHTIEVLARKA 101
              FT  +K   A G A L A      +++LA  A
Sbjct: 189 DEVFT--VKLATANGGAELNASYTELRVKILANDA 221


>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
          Length = 572

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 132 SAVSVDDPGIRPNMIYSNEPGYYEVGEYGIRHEDLVQTIEMNSSADHVLADGIIGDFDGR 191
           +A  VDD  +   ++  N PG   + +   R + + +++    S+  V   GI+GD + R
Sbjct: 396 TASIVDDQKLA-ELLGFNSPGEMMLAQIRARLDSVTESVISRRSSSFVGIFGIVGDDNYR 454

Query: 192 GAVAFYTISLAPHQTACLDVNLL 214
             V+ Y   L P   + +DV++L
Sbjct: 455 D-VSSYNSKLDPDTLSAIDVSVL 476


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 146 IYSNEPGYYEVGEYGIRHEDLVQTIEMNSSADHVLADGIIGDFDGRGAVAFYTISLAPHQ 205
           +Y N+   +   E  +R   L  TI    ++   +A   + D+DG G + FYT    PH 
Sbjct: 174 LYINDGMGHFTEEAEVRGVALEPTISPYQTSTMTIA---VADYDGDGWLDFYTTEWLPHL 230

Query: 206 TACLDVNLLTDLEIKYLNNYHAR 228
               D    T    K L N  A+
Sbjct: 231 DQSFDYQNGTHSNCKLLRNLGAQ 253


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 130 ILSAVSVDDPGIR-PNMIYSNEPGYYEVGEY 159
           I+S + VDD  IR  N+ +SNE GY   G Y
Sbjct: 533 IVSRLRVDDTRIRNKNVAFSNENGYVGTGSY 563


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 2   GPSFSTIAGAGENGAIIHY-SPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNS 60
           GP F +      +   I Y +P + GP R  T     L  +    KDG  +I+R R+++ 
Sbjct: 527 GPLFESEVNDDNSDLFITYVTPFARGPIRP-TLSLRHLSYTSNHEKDGNLEISRERYLDG 585

Query: 61  SPTPEQR 67
           SP    R
Sbjct: 586 SPRVRSR 592


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/67 (22%), Positives = 30/67 (44%)

Query: 34  DDMVLVDSGGQYKDGTTDITRTRHMNSSPTPEQRRAFTRVMKGQIALGTAVLPAGILGHT 93
           DD+ L D G   +DGT+D++ ++   +    E          G +   T++    + G+ 
Sbjct: 452 DDLALADDGSDVEDGTSDVSSSKDDVTDAVNEVNGGVVEDDAGSLFPDTSIDLKVVSGND 511

Query: 94  IEVLARK 100
           I +  R+
Sbjct: 512 INIRIRQ 518


>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
          Length = 924

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 124 HEAPAWILSAVSVDDPGIRPNMIYSNEPGYYEVGEYGIRHEDLVQTIEMNSSADHVL 180
           HEAPA  LSA  +++P +  N++   +P   +  ++G +     Q +  + S   V+
Sbjct: 335 HEAPACDLSAAEMEEPSLFANLLPDCKPVASKSRQFGKKDRAGSQQLASSQSLKRVV 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,340,612
Number of Sequences: 59808
Number of extensions: 370016
Number of successful extensions: 851
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 11
length of query: 280
length of database: 16,821,457
effective HSP length: 81
effective length of query: 199
effective length of database: 11,977,009
effective search space: 2383424791
effective search space used: 2383424791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)