GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001640-TA|BGIBMGA001640-PA|IPR000994|Peptidase M24,
catalytic core
         (280 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...   165   3e-41
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...   118   4e-27
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U50313-4|AAA92328.1|  417|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z22181-3|CAA80181.3|  416|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
           protein 1 protein.
          Length = 616

 Score =  165 bits (401), Expect = 3e-41
 Identities = 99/256 (38%), Positives = 139/256 (54%), Gaps = 19/256 (7%)

Query: 4   SFSTIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPT 63
           SF TI+  G++ A+ HY PL E   R    + + L+DSG  Y DGTTD+TRT    ++P 
Sbjct: 377 SFDTISAVGDHAALPHYKPLGESGNRKAAANQVFLLDSGAHYGDGTTDVTRT-VWYTNPP 435

Query: 64  PEQRRAFTRVMKGQIALGTAVLPAGILGHTIEVLARKALWDIGLNYXXXXXXXXXXYLNV 123
            E     T V+KG I L  A  P GI G  ++ L R ALW +GL++          YLNV
Sbjct: 436 KEFILHNTLVLKGHINLARAKFPDGIYGSRLDTLTRDALWKLGLDFEHGTGHGVGHYLNV 495

Query: 124 HEAPAWILSAVSVDDPG-IRPNMIYSNEPGYYEVGEYGIRHEDLVQTIE--MNSSADHVL 180
           HE P  I    SV   G +  + + + EPG+Y   +YGIR E+  +T+E  + S A + L
Sbjct: 496 HEGPIGI-GHRSVPTGGELHASQVLTIEPGFYAKEKYGIRIENCYETVEAVVMSKAQNFL 554

Query: 181 ADGIIGDFDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQR 240
                          F +++L P QT+ +D +LL + EI +LN YHARVL  +G  L++R
Sbjct: 555 --------------TFKSLTLVPIQTSIVDKSLLIEEEINWLNQYHARVLKEVGEHLQKR 600

Query: 241 GYNDVLEWLTDECAPI 256
           G  D L+WL + C PI
Sbjct: 601 GKTDELKWLAEACKPI 616


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
            protein Y45G5AM.2 protein.
          Length = 1061

 Score =  118 bits (285), Expect = 4e-27
 Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 17/251 (6%)

Query: 7    TIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPTPEQ 66
            TI  AGE+ ++  + P     Q+++      +  +G  Y DG T+  RT   +S PT E 
Sbjct: 827  TIFSAGEHSSVHAHRP---DAQKIVFHYQQFMFQTGSHYTDGATNCARTI-WDSYPTEEF 882

Query: 67   RRAFTRVMKGQIALGTAVLPAGIL-GHTIEVLARKALWDIGLNYXXXXXXXXXXYLNVHE 125
               +T V+KG I L +A  P  +  G  +++ AR ALWD GL+Y          +LN+ +
Sbjct: 883  MNQYTLVLKGHIRLASASFPKTLTYGSRLDIFARIALWDAGLDYDHETGHSVGHFLNIRD 942

Query: 126  APAWILSAVSVDDPGIRPNMIYSNEPGYYEVGEYGIRHEDLVQTIEMNSSADHVLADGII 185
                I       +  I    + + EPGYY  G YGIR  +  +T+++  S          
Sbjct: 943  TQIVIGREPYSSNSIIEAGQVMTIEPGYYSEGMYGIRIGNCYETVDVTLSQ--------- 993

Query: 186  GDFDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDV 245
               + +  + F  ++L P QT+ ++ +LLT  EI +LN YH +V + +G IL +    + 
Sbjct: 994  ---NDQYFLRFEPLTLIPIQTSIVNKDLLTSEEINWLNKYHFKVFSKIGYILRKENRMEE 1050

Query: 246  LEWLTDECAPI 256
             +WL + C PI
Sbjct: 1051 YDWLFNACQPI 1061


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 4   SFSTIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPT 63
           +++ IA  G NG+++HY   +    + I   DM L D G +Y    +DIT +   N   T
Sbjct: 237 AYTCIAATGCNGSVLHYGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFT 296

Query: 64  PEQRRAFTRVMKGQIALGTAVLPAGILGHTIEVLARKAL 102
            +Q+  +  V+   +A+  A  P G+    + +L+ K +
Sbjct: 297 EKQKIVYNAVLAANLAVLKAAKP-GVRWTDMHILSEKVI 334


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 157  GEYGIRHEDLVQTIEMNSSADHVLADGIIGDFDGRGAVAF 196
            G +GIR E +  +  + + A++ + DG + D +G GA AF
Sbjct: 1229 GIFGIRFELVSISNSLMNGANYTIYDGTVKDSNGLGAAAF 1268


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 157  GEYGIRHEDLVQTIEMNSSADHVLADGIIGDFDGRGAVAF 196
            G +GIR E +  +  + + A++ + DG + D +G GA AF
Sbjct: 1229 GIFGIRFELVSISNSLMNGANYTIYDGTVKDSNGLGAAAF 1268


>U50313-4|AAA92328.1|  417|Caenorhabditis elegans Hypothetical
           protein F44C4.2 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 135 SVDDPGIRPNMIYSNEPGYYEVGEYGIRHEDLVQTIEMNSS 175
           SV+ PGI PN +++  P   +     I   DLV+ IE + S
Sbjct: 122 SVESPGIDPNFLFTFSPKTPDKPNMVISFNDLVKKIETSFS 162


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 41  SGGQ---YKDGTTDITRTRHMNSSPTPE-QRRAFTRVMKGQIALGTAV 84
           SGG    +++G   + RTR +N  P PE Q+   T +++  I+ GT++
Sbjct: 100 SGGHKTIHRNGKCILNRTRRVNRKPEPEKQKNLRTAMLEYAISSGTSL 147


>Z22181-3|CAA80181.3|  416|Caenorhabditis elegans Hypothetical
           protein ZK632.4 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 5   FSTIAGAGENGAIIHYSPLSEGPQRVITKDDMVLVDSGGQYKDGTTDITRTRHMNSSPTP 64
           F  ++G  ++  I  Y  L    Q ++T+++   +DS G Y + +  + +        TP
Sbjct: 134 FELLSGFRQHSQISEYLKLYSEIQELLTEEEKSQIDSLGSYGESSAQVLKKIFSRIWRTP 193

Query: 65  EQR 67
           +++
Sbjct: 194 KEK 196


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,803,751
Number of Sequences: 27539
Number of extensions: 274305
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 11
length of query: 280
length of database: 12,573,161
effective HSP length: 80
effective length of query: 200
effective length of database: 10,370,041
effective search space: 2074008200
effective search space used: 2074008200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)