GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001639-TA|BGIBMGA001639-PA|IPR000994|Peptidase M24,
catalytic core, IPR012678|Ribosomal L23 and L15e, core
         (750 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         30   0.050
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    27   0.62 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   4.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   4.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   5.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   7.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 30.3 bits (65), Expect = 0.050
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 10  PQKQPRAESSQSKLKMKKPPEIHQNDPGKTVTQSRPKRSPKQLKN--VDKNPEYYPEKVK 67
           P+ +     +Q  L  K  P  +    G+   QSR KR PK  +     +NP YY  +  
Sbjct: 181 PKAKINTGKTQYNLNSKSLPRQYSQSRGRH-NQSRSKRQPKTGREDQTRRNP-YYRPRTS 238

Query: 68  RTKPVKK 74
           RT+P ++
Sbjct: 239 RTEPPRR 245


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 26.6 bits (56), Expect = 0.62
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 444 RREWVSGLRGSSGTSVVTATRALVWTDARYFTQFEV-EVDGSLWEL 488
           +R W + +     +S VT++ ALV + A      ++ +VD   W+L
Sbjct: 2   KRRWSARVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLEFWDL 47


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 176 ETINLKIN-IDRNNKKFIEKRSK-LENILGNIKTKVCNSEADVITSEEEPLIFNDD 229
           +TINL+I  I   N  F+   S  L    G I  ++    ++ +TSE+  +  NDD
Sbjct: 215 QTINLQITFIWTYNDLFVMLISTALAYRFGQITRRIAAVASEKVTSEKSWIALNDD 270


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 496 SIQNWLVANMPPNSVVAVDPTTYTRNSWNTLQAALTRANIKLEAISENLIDLARVSIGDG 555
           S+   + ++  P  V  VD   ++      L    ++   K +A S++  D+  +S    
Sbjct: 176 SVSPLISSSSSPPGVFPVDAPMHSPPGDGILD--FSKRGQKSDADSDS--DVVNLSKPGT 231

Query: 556 PPS-RPNNPLIPLTVNFTGRPSSDKISQ 582
           PPS  P N  + L+V+   R + D +SQ
Sbjct: 232 PPSGEPGNGPLDLSVSSRKRSNDDSVSQ 259


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)

Query: 631 VAPNNIILFWGNGV 644
           VAPNNIIL  G GV
Sbjct: 159 VAPNNIILGNGTGV 172


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 49   PKQLKNVDKNPEYYPEKVKRTKPVKKIIMKPKST 82
            PK  K  +K P + P      KP K     P +T
Sbjct: 1147 PKSAKCEEKKPGHKPSTSSWQKPTKPSYRPPSTT 1180


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,519
Number of Sequences: 317
Number of extensions: 7182
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 750
length of database: 114,650
effective HSP length: 62
effective length of query: 688
effective length of database: 94,996
effective search space: 65357248
effective search space used: 65357248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)