GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001639-TA|BGIBMGA001639-PA|IPR000994|Peptidase M24,
catalytic core, IPR012678|Ribosomal L23 and L15e, core
         (750 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       27   2.4  

>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 261 RPAKNSPQ--DSISDRNITFLDDSDMKATDDVTAVINDRCQSDGVMREIESNLDEFLDDS 318
           R  K +PQ  +   D ++ F DDSD     D    + DR +S+      E+ ++E L D+
Sbjct: 79  RSKKTNPQIVEYEFDDDLPFDDDSDFDDDSDFDDDVGDRLESEEEDSTDETLIEEELTDT 138


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,497
Number of Sequences: 2123
Number of extensions: 29528
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 1
length of query: 750
length of database: 516,269
effective HSP length: 69
effective length of query: 681
effective length of database: 369,782
effective search space: 251821542
effective search space used: 251821542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)