GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001639-TA|BGIBMGA001639-PA|IPR000994|Peptidase M24,
catalytic core, IPR012678|Ribosomal L23 and L15e, core
         (750 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.98 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   6.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   6.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.98
 Identities = 16/67 (23%), Positives = 26/67 (38%)

Query: 6   TKSKPQKQPRAESSQSKLKMKKPPEIHQNDPGKTVTQSRPKRSPKQLKNVDKNPEYYPEK 65
           T S P   PR  S+ S      PP       G+   ++  + + ++LK +       P  
Sbjct: 507 TNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLP 566

Query: 66  VKRTKPV 72
           + RT  V
Sbjct: 567 LARTPSV 573


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 670 TYLGTLAASNVNIQSSVSPVALMKVI 695
           T L TLA  N   Q S+ PV+ +K I
Sbjct: 251 TSLLTLATQNTQSQQSLPPVSYVKAI 276


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 6    TKSKPQKQPRAESSQSKLKMKK 27
            TKSKP K    E +++ +K+KK
Sbjct: 1720 TKSKPYKFHCMEKNEAAMKLKK 1741


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 298 CQSDGVMREIESNLDEFL 315
           C+ D  ++E+ S+LD+FL
Sbjct: 26  CRRDAEIQELRSHLDKFL 43


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,644
Number of Sequences: 429
Number of extensions: 8881
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 750
length of database: 140,377
effective HSP length: 63
effective length of query: 687
effective length of database: 113,350
effective search space: 77871450
effective search space used: 77871450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)