GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001638-TA|BGIBMGA001638-PA|IPR000994|Peptidase M24,
catalytic core
         (630 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    25   1.6  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    23   6.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   8.4  

>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
          (isoform B) protein.
          Length = 96

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 42 RREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFE-REVDLSAWTL 86
          +R W +       ++ VTSS ALV +        +  +VDL  W L
Sbjct: 2  KRRWSARVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLEFWDL 47


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 140 ISNNLVDDVRMELGDPAPKRSHNELAPL 167
           +  ++V ++R  LGD + K S+N+L  L
Sbjct: 18  VQESIVAEMREVLGDLSKKPSYNDLQNL 45


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 120 RDEWTPIQTALKKISAQLVPISNNLVDD 147
           RD  +  QT   K +A ++PI +NL+ D
Sbjct: 196 RDLMSCAQTGSGKTAAFMLPIIHNLLSD 223


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,447
Number of Sequences: 317
Number of extensions: 5671
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 630
length of database: 114,650
effective HSP length: 61
effective length of query: 569
effective length of database: 95,313
effective search space: 54233097
effective search space used: 54233097
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)