Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001638-TA|BGIBMGA001638-PA|IPR000994|Peptidase M24,
catalytic core
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 374 e-104
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 45 3e-05
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 29 1.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 29 1.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 28 4.5
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 5.9
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 5.9
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 27 5.9
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 7.9
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 7.9
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 374 bits (919), Expect = e-104
Identities = 224/599 (37%), Positives = 320/599 (53%), Gaps = 39/599 (6%)
Query: 5 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 64
RL LR LM + L Y++P+ DAH+SEY ADARR +IS F GSAG AV+ + A
Sbjct: 8 RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAA 65
Query: 65 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 124
++TDGRY+ Q +++D + WTLMKQ PT E++ K + VG+D +T
Sbjct: 66 LFTDGRYFNQASQQLDEN-WTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAK 124
Query: 125 PIQTAL-KKISAQLVPISNNLVDDVRMELGDPAPKRSHNELAPLHVRYTGRTAGEKIAEL 183
++ +L K A LV +NLVD V G PK +L ++Y G EK+ L
Sbjct: 125 ALRESLFLKSGAVLVGDHDNLVDIV---WGASRPKEPLEKLIVQEIKYAGLGVDEKLHNL 181
Query: 184 RRKMAEKKASALVLTALDDIAYTLNLRGSDIEYNPVFFSYLIVMETNVVLYWGDGQLPPS 243
R M E+K A V++ LD++A+ NLRG+D+ YNPVFF+Y +V LY + ++ P
Sbjct: 182 REAMKEQKIEAFVVSMLDEVAWLYNLRGADVPYNPVFFAYSLVTLDEAFLYVDERKVTPE 241
Query: 244 VTDHLREEGVDSVEGKPYGDILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAASGSD 303
V+ HL +G V+ PY + K L+ G W A S +
Sbjct: 242 VSKHL--DGF--VKILPYDRVFSDAKN--SNLTRIGISSKTSWCI---------ATSFGE 286
Query: 304 VLKRPIDLISEVSPVKLAKLVKNEIELQGFRNCHIKDGIAVVRFFRWLHDQIDSGEQITE 363
PI +SP+ AK +KN+ EL+G + CHI+DG A+V +F WL + ++SG +I E
Sbjct: 287 TKVMPI-----LSPISQAKGIKNDAELKGMKECHIRDGCALVEYFAWLDEYLNSGNKINE 341
Query: 364 VQASDKLLEFRRDEKDFMGPSFGTIAGSGANGAIIHYSPDREGQQTVIERDHMFLLDSGG 423
A+ KL +FRR FMG SF TI+ +G NGA+IHYSP G +I+ ++L DSG
Sbjct: 342 FDAATKLEQFRRKNNLFMGLSFETISSTGPNGAVIHYSPPATG-SAIIDPTKIYLCDSGA 400
Query: 424 QYRDGTTDITRTRHMSGNPTAEQKDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARHALW 483
QY+DGTTD+TRT H G P+ ++ T LKG I + + +FPKG G ++D AR LW
Sbjct: 401 QYKDGTTDVTRTWHF-GEPSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQYLW 459
Query: 484 EXXXXXXXXXXXXXXXXXNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRH 543
+ NVHE P G+ R + L G + SNEPGFY+ G +G R
Sbjct: 460 KYGLDYLHGTGHGVGSFLNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYEDGHFGYRV 519
Query: 544 EDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEIMTDFEMSYV 602
E+ + I V N + GR LG LTL P+ ++ ID +++ E+ Y+
Sbjct: 520 ENCVYITEV----------NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYL 568
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 388 IAGSGANGAIIHYSPDREGQQTVIERDHMFLLDSGGQYRDGTTDITRTRHMSGNPTAEQK 447
+ G NG IHY+ + + + D M L+D+GG++ TDI+RT ++G + Q+
Sbjct: 289 VVAGGKNGLTIHYTINND----IFRPDEMVLVDAGGEFGGYVTDISRTWPINGKFSTVQR 344
Query: 448 DAFTRVLKGQ 457
D + VL Q
Sbjct: 345 DLYQAVLNVQ 354
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 264 ILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAASGSDVLKRPIDLI 312
++EGL+++ ++ +GDG + AN SG++V K D+I
Sbjct: 865 LIEGLQKLGNVVAVTGDGTNDAPALKKANVGFSMGKSGTEVAKEASDII 913
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 284 VIWLSNDANEAIHRAASGSDVLKRPIDLISEVSPVKLAKLVKNEIELQGFRNCHIKDGIA 343
+++ +N + + A + +VL + DLI+E+ ++ I L+ F+N + +
Sbjct: 179 LVYYNNAGQKKVFTAHTPYEVLSKHADLITELDETDGKVYPQSIIRLEEFKNLKANEPV- 237
Query: 344 VVRFFRWLHD 353
FF +LHD
Sbjct: 238 ---FFLYLHD 244
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.9 bits (59), Expect = 4.5
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 28 ADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL-VWTDGRYYTQFEREVDLSAWTL 86
A+A EY D+ W+ F G ++ A +W ++
Sbjct: 54 ANAAGKEYGDSG-VSESWVLDFLSVTGEKTISEFLAQKIWKTSNGDLNVAVDMYFDESFN 112
Query: 87 MKQTLPDTPTLEKWLASNLKDGDVVG--VDPQTMTRDEWTPIQTALKKISAQLVPISNNL 144
+K + PD+ + +K ++L D + V + ++ + T + AL +S L SN+
Sbjct: 113 IKNSNPDSES-QKDTDASLTQMDQLSNTVSVKDLSINRNTN-KKALNAVSPSLNLSSNSS 170
Query: 145 VDDVRMELGDPAPKRSHNELAPL 167
V DV ++ + K+S N L PL
Sbjct: 171 VQDVSIDKEEMMKKQSRNALTPL 193
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 310 DLISEVSPVKLAKLVK-----NEIELQGFRNCHIKDG 341
+L+SE SP K AKL++ + + L GF++ H DG
Sbjct: 582 ELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDG 618
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 243 SVTDHLREEGVDSVEGKPYGDILEGLKEMAREL 275
S D LREE ++ EG G+I++ M EL
Sbjct: 780 SAFDQLREEFMEVAEGTLLGEIIQSAPNMKEEL 812
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 27.5 bits (58), Expect = 5.9
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 173 GRTAGEKIAELRRKMAEKKASALVLTALDDIAYTLNLRGSDIEYNPVFFSYLIVMETNVV 232
GR + + +LRR + + A L +TL L +D V+ SY+I+ TN
Sbjct: 453 GRGSNSSLRQLRRGLETTEIVASELPGAPIAIWTLKLNQTD-----VYDSYIILSFTNGT 507
Query: 233 LYWGDGQLPPSVTDHLREEGVDSVEGKPYG 262
L G+ ++D V ++ + G
Sbjct: 508 LVLSIGETVEEISDSGFLSSVSTLNARQMG 537
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 225 IVMETNVVLYWGDGQLPPSVTDHLRE 250
I+ + +V +Y G G L PS+ D+ RE
Sbjct: 155 ILPQPDVFIYQGSGSLRPSIIDYPRE 180
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 183 LRRKMAEKKASALVLTALDDIAYTLNLRGSDI----EYNPVFFSYLIVM 227
L R+ EK SA +L+D+ + L GSD NPV + +L+++
Sbjct: 435 LSREFTEKSVSAHEFFSLEDVQHILLSYGSDYFTNNGSNPVMYFFLLML 483
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,699
Number of Sequences: 5004
Number of extensions: 115058
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 11
length of query: 630
length of database: 2,362,478
effective HSP length: 77
effective length of query: 553
effective length of database: 1,977,170
effective search space: 1093375010
effective search space used: 1093375010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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