GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001638-TA|BGIBMGA001638-PA|IPR000994|Peptidase M24,
catalytic core
         (630 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...   362   e-100
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...   223   4e-58
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    45   1e-04
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    31   2.5  
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    29   9.9  

>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
           protein 1 protein.
          Length = 616

 Score =  362 bits (890), Expect = e-100
 Identities = 219/608 (36%), Positives = 326/608 (53%), Gaps = 35/608 (5%)

Query: 2   SLQRLQALRALMSSQRPV-------LAAYIIPTADAHNSEYIDAADARREWISAFTGSAG 54
           +L++L  LR+L  S+R +       + AY++P+ DAH+SEY+   D R +++S F+GS  
Sbjct: 3   ALEKLAKLRSLFHSERVLALTSSKPMVAYLLPSTDAHHSEYLADYDFRVKFLSGFSGSNA 62

Query: 55  TAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 114
             VVT  +AL+WTDGRY+TQ   ++D ++W LMKQ  PD+ T+  WL   L+ G V+G D
Sbjct: 63  YVVVTDREALLWTDGRYFTQAGNQLDSNSWKLMKQGQPDSITVVDWLVRELERGSVIGFD 122

Query: 115 PQTMTRDEWTPIQTALKKISAQLVPISNNLVDDVRMELGDPAPKRSHNELAPLHVRYTGR 174
           P   T D  +     LK    Q V I  NLVD    E     P+ +   +  L V  TG 
Sbjct: 123 PTLSTFDAGSKTFKRLKAAGLQPVSIPGNLVD----EFWTDRPRLAGEPVVVLDVEDTGL 178

Query: 175 TAGEKIAELRRKMAEKKASALVLTALDDIAYTLNLRGSDIEYNPVFFSYLIVMETNVVLY 234
           T  +K+  LR K+ +KK  A V T LDD+ + LN+RGSDI YNP+ +SYL V    + ++
Sbjct: 179 TTSKKVENLREKLKQKKCDAAVFTLLDDVMWLLNIRGSDIPYNPLAYSYLFVAMREIHVF 238

Query: 235 WGDGQLPPSVTDHLREEGVDSVEGKPYGDILEGLKEMARELSESGDGRHVIWLSNDANEA 294
             + +L      H  +  V S+   PYG++   +    +   E+    H+++L+ + N A
Sbjct: 239 IDNEKLDEKSRAHFHKSNV-SIH--PYGEVYSWISNWLK-AKEASKEPHMVYLTPETNYA 294

Query: 295 IHRAASGSDVLKRPIDLISEVSPVKLAKLVKNEIELQGFRNCHIKDGIAVVRFFRWLHDQ 354
           I     GS + +   + + + S V+ AK  KN+ E+QG RN H++D  A+V F  WL  +
Sbjct: 295 I-----GSIIGEE--NSMVDTSLVQTAKATKNDHEMQGMRNSHLRDSAALVEFLCWLEKE 347

Query: 355 IDSGEQITEVQASDKLLEFRRDEKDFMGPSFGTIAGSGANGAIIHYSPDREGQQTVIERD 414
           + SG++ TE++ +DK+   R  +  ++  SF TI+  G + A+ HY P  E        +
Sbjct: 348 LLSGKRYTEIELADKIDHLRSLQDKYVTLSFDTISAVGDHAALPHYKPLGESGNRKAAAN 407

Query: 415 HMFLLDSGGQYRDGTTDITRTRHMSGNPTAEQKDAFTRVLKGQIMIGSALFPKGVKGNVL 474
            +FLLDSG  Y DGTTD+TRT   + NP  E     T VLKG I +  A FP G+ G+ L
Sbjct: 408 QVFLLDSGAHYGDGTTDVTRTVWYT-NPPKEFILHNTLVLKGHINLARAKFPDGIYGSRL 466

Query: 475 DSFARHALWEXXXXXXXXXXXXXXXXXNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFY 534
           D+  R ALW+                 NVHEGP G+  R  P    L+  Q+L+ EPGFY
Sbjct: 467 DTLTRDALWKLGLDFEHGTGHGVGHYLNVHEGPIGIGHRSVPTGGELHASQVLTIEPGFY 526

Query: 535 KVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEIM 594
              +YGIR E+  E V     S   KA+N          L F +LTLVP Q   +D  ++
Sbjct: 527 AKEKYGIRIENCYETVEAVVMS---KAQNF---------LTFKSLTLVPIQTSIVDKSLL 574

Query: 595 TDFEMSYV 602
            + E++++
Sbjct: 575 IEEEINWL 582


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
            protein Y45G5AM.2 protein.
          Length = 1061

 Score =  223 bits (544), Expect = 4e-58
 Identities = 171/607 (28%), Positives = 288/607 (47%), Gaps = 50/607 (8%)

Query: 5    RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 64
            R  + R L  + R  +AAYI+P  DAH +E I    +R ++++ ++G +G A++T ++A+
Sbjct: 462  RFASERTLGYTDRTPIAAYILPNTDAHQNELIPDFFSRVQFLNGYSGPSGLAIITLNEAM 521

Query: 65   VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 124
             W D       E +VD  +WT+  +       +  WLA  L     VG DP T+    W 
Sbjct: 522  FWVDNGLLKSAESQVDDRSWTV--KEYQSVEEVINWLAKILPPKSKVGFDP-TLVSYTWH 578

Query: 125  PIQTALKKISA---QLVPISNNLVDDV-RM---ELGDPAPKRSHN-ELAPLHVRYTGRTA 176
              Q AL+ +++   +LV I  N+VD++ RM   + GD       N    P+HV       
Sbjct: 579  --QQALQSMTSDRFELVAIPGNIVDEIWRMRPFQRGDVVKMLDKNTPEIPVHV------- 629

Query: 177  GEKIAELRRKMAEKKASALVLTALDDIAYTLNLRGSDIEYNPVFFSYLIVMETNVVLYWG 236
              KI  LR+ +   K  A V+T+L+DI + LN+RG+D+ YNPV +SYL +  ++V L+  
Sbjct: 630  --KIDRLRKSLKPNKCLAAVITSLEDIMWLLNIRGNDLPYNPVTYSYLFITMSDVRLFID 687

Query: 237  DGQLPPSVTDHLREEGVDSVEGKPYGDILEGLKEMARELSESGDGRHVIWLSNDANEAIH 296
              +L      +   + +D  + K     +     ++   S   D +  I +S + N  I 
Sbjct: 688  AKRLNDVSKAYFARQSIDVDDYKAASPYI--YDWISATKSSFADKK--ILISPETNYLIG 743

Query: 297  RAASGSDVLKRPIDLISEVSPVKLAKLVKNEIELQGFRNCHIKDGIAVVRFFRWLHDQID 356
            R   G D        + + S ++  K +KN  +L+G R  +++D IA+V F      +  
Sbjct: 744  RLI-GED------HSMIDPSIMERIKKIKNTDQLKGMRASNLRDSIAIVEFLCKFEKERR 796

Query: 357  SGEQITEVQASDKLLEFRRDEKDFMGPSFGTIAGSGANGAIIHYSPDREGQQTVIERDHM 416
             G   TE + +  + E +   ++++G    TI  +G + ++  + PD    Q ++     
Sbjct: 797  DGYTFTEYELAADIEEVKTRNREYIGLKQPTIFSAGEHSSVHAHRPD---AQKIVFHYQQ 853

Query: 417  FLLDSGGQYRDGTTDITRTRHMSGNPTAEQKDAFTRVLKGQIMIGSALFPKGVK-GNVLD 475
            F+  +G  Y DG T+  RT      PT E  + +T VLKG I + SA FPK +  G+ LD
Sbjct: 854  FMFQTGSHYTDGATNCART-IWDSYPTEEFMNQYTLVLKGHIRLASASFPKTLTYGSRLD 912

Query: 476  SFARHALWEXXXXXXXXXXXXXXXXXNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYK 535
             FAR ALW+                 N+ +    +   PY  +  +  GQ+++ EPG+Y 
Sbjct: 913  IFARIALWDAGLDYDHETGHSVGHFLNIRDTQIVIGREPYSSNSIIEAGQVMTIEPGYYS 972

Query: 536  VGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEIMT 595
             G YGIR  +  E V V                + +  L F  LTL+P Q   ++ +++T
Sbjct: 973  EGMYGIRIGNCYETVDVTLSQ------------NDQYFLRFEPLTLIPIQTSIVNKDLLT 1020

Query: 596  DFEMSYV 602
              E++++
Sbjct: 1021 SEEINWL 1027


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 384 SFGTIAGSGANGAIIHYSPDREGQQTVIERDHMFLLDSGGQYRDGTTDITRTRHMSGNPT 443
           ++  IA +G NG+++HY          I+   M L D G +Y    +DIT +   +G  T
Sbjct: 237 AYTCIAATGCNGSVLHYGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFT 296

Query: 444 AEQKDAFTRVLKGQIMIGSALFPKGVK 470
            +QK  +  VL   + +  A  P GV+
Sbjct: 297 EKQKIVYNAVLAANLAVLKAAKP-GVR 322


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
            protein Y47D3A.29 protein.
          Length = 1428

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 535  KVGEYGIRHEDLIEIVAVDKGSDHP 559
            K G++ +RH D++E V  + G+D+P
Sbjct: 1128 KSGKFNLRHNDIVEYVICEDGTDNP 1152


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 347 FFRWLHDQIDSGEQITEVQASDKLLEFRRDEKDFMGPSFGTIAGSGANGAIIHYS 401
           +F WL+   D     + V A+  + +   DE DF+ P+   ++ S  N   IHY+
Sbjct: 351 YFAWLNSVFDGKTSNSTVVANYMIAQLLADESDFINPATAKVS-SDTN--YIHYA 402


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,416
Number of Sequences: 27539
Number of extensions: 644801
Number of successful extensions: 1512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 6
length of query: 630
length of database: 12,573,161
effective HSP length: 86
effective length of query: 544
effective length of database: 10,204,807
effective search space: 5551415008
effective search space used: 5551415008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)