Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001637-TA|BGIBMGA001637-PA|IPR006818|Anti-silencing
protein, ASF1-like
(216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0047 + 27314254-27314362,27316333-27316448,27316639-27316980 209 1e-54
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377... 153 1e-37
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 33 0.23
03_05_0263 + 22503943-22506240 31 0.72
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 30 1.3
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76... 30 1.7
01_06_0429 + 29294517-29294591,29295252-29295363,29295599-29295687 27 8.8
>05_07_0047 + 27314254-27314362,27316333-27316448,27316639-27316980
Length = 188
Score = 209 bits (511), Expect = 1e-54
Identities = 103/180 (57%), Positives = 131/180 (72%), Gaps = 6/180 (3%)
Query: 1 MAKVHITNVVVLDNPSPFLNPFQFELTFECIEELKEDLEWKMIYVGSAETEEHDQVLDTI 60
M+ V+ITNV VLDNP+ FLNPFQFE+++EC+ L +DLEWK+IYVGSAE E +DQ L+++
Sbjct: 1 MSAVNITNVAVLDNPTAFLNPFQFEISYECLIPLDDDLEWKLIYVGSAEDENYDQQLESV 60
Query: 61 YVGPIPEGRHMFVFQAPPPDVTKIPENDALGVTVVLLTCSYRGQEFVRVGYFINNDYSES 120
VGP+ G + FV QA PPD +KI E D +GVTV+LLTCSY GQEF+RVGY++NNDY +
Sbjct: 61 LVGPVNVGTYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYMGQEFMRVGYYVNNDYDDE 120
Query: 121 EPELRENTPAKPQFDKVVRNILASAPRVTRFKINWAEPDAGTAIDAGDSNLEISHA-PSN 179
+LRE PAK D+V RNILA PRVT+F IN+ P+ T+ AG E A P N
Sbjct: 121 --QLREEPPAKLLIDRVQRNILADKPRVTKFPINF-HPEPSTS--AGQQQQEPQTASPEN 175
>01_06_0291 -
28236235-28236576,28236785-28236900,28237560-28237731,
28238916-28239044,28239165-28239320
Length = 304
Score = 153 bits (370), Expect = 1e-37
Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 3/143 (2%)
Query: 37 DLEWKMIYVGSAETEEHDQVLDTIYVGPIPEGRHMFVFQAPPPDVTKIPENDALGVTVVL 96
DLEWK+IYVGSAE E +DQ+L+++ VGP+ G + FV QA PPD +KI + D +GV V+L
Sbjct: 153 DLEWKLIYVGSAEDENYDQLLESVLVGPVNVGTYRFVLQADPPDPSKIRKEDIIGVIVLL 212
Query: 97 LTCSYRGQEFVRVGYFINNDYSESEPELRENTPAKPQFDKVVRNILASAPRVTRFKINWA 156
LTCSY GQEF+RVGY++NND + +LRE PAK D+V RNILA P VT+F IN+
Sbjct: 213 LTCSYMGQEFIRVGYYVNND--NDDEQLREEPPAKLLIDRVQRNILADKPSVTKFPINF- 269
Query: 157 EPDAGTAIDAGDSNLEISHAPSN 179
P+ + S +P N
Sbjct: 270 HPETSAGAGQEQQQQQQSGSPEN 292
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 5 HITNVVVLDNPSPFLNPFQFE-LTFECIEELKEDLEWKMIYVGSAETEEHDQVLD 58
H + + N S L +F L +C+EELKE + +I +G A+ +EH V+D
Sbjct: 272 HFRRALHILNSSKLLRDLRFRFLAAKCLEELKEWHQC-LIILGDAKIDEHGNVVD 325
>03_05_0263 + 22503943-22506240
Length = 765
Score = 31.1 bits (67), Expect = 0.72
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 139 RNILASAPRVTRFKINWAEPDAGTAIDAGDSNLEISHAPSNDSYSASFNAESQISGIEFQ 198
R L + +K++ A G A+ + L + A SY+ SF A+SQ SG
Sbjct: 686 RRTLTNVGAAGTYKVS-AAAMPGVAVAVEPTELAFTSAGEKKSYTVSFTAKSQPSGTAGF 744
Query: 199 GSLSGYGDNSNSIA-PM 214
G L + D +S+A PM
Sbjct: 745 GRLV-WSDGKHSVASPM 760
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 45 VGSAETEEHDQVLDTIYVGPIPEGRHMFVFQAPPPDVTKIPENDALGVTVV 95
V ++E+E + V P+ E + P PDV+KI + ++L + +V
Sbjct: 310 VSTSESEPEPEPEPVKEVSPVHEPTDLLGMNEPTPDVSKIDQKNSLALAIV 360
>10_01_0053 -
767131-767962,768517-769037,769384-769601,769720-769825,
769958-770017
Length = 578
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 157 EPDAGTAID--AGDSNLEISHAPSNDSYSASFNAESQISGIEFQGSLSGYGDNSNSI 211
+P G A GD ++++++ P+ + ++ A I G+EF +L+ YG + N +
Sbjct: 17 QPSRGDADSEYTGDGSVDVNNQPALKRSTGNWRACFMILGVEFSENLAYYGISKNLV 73
>01_06_0429 + 29294517-29294591,29295252-29295363,29295599-29295687
Length = 91
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 76 APPPDVTKIPENDALGVTVVLLTCSYRGQEFVRVGYFINNDYSE 119
A P + +P +A G TV+L+T Y +E V F++++ E
Sbjct: 13 AAGPALLLLPRREA-GTTVILMTAKYPNKEHVAYATFMSSNPRE 55
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.134 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,912,841
Number of Sequences: 37544
Number of extensions: 296959
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 7
length of query: 216
length of database: 14,793,348
effective HSP length: 79
effective length of query: 137
effective length of database: 11,827,372
effective search space: 1620349964
effective search space used: 1620349964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -