GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001637-TA|BGIBMGA001637-PA|IPR006818|Anti-silencing
protein, ASF1-like
         (216 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18561| Best HMM Match : Anti-silence (HMM E-Value=0)               184   7e-47
SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)                   31   0.97 
SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)           30   1.7  
SB_30226| Best HMM Match : Lactamase_B (HMM E-Value=8.4e-19)           28   5.2  
SB_15635| Best HMM Match : DCP1 (HMM E-Value=0.16)                     27   9.0  

>SB_18561| Best HMM Match : Anti-silence (HMM E-Value=0)
          Length = 170

 Score =  184 bits (447), Expect = 7e-47
 Identities = 81/132 (61%), Positives = 108/132 (81%), Gaps = 2/132 (1%)

Query: 1   MAKVHITNVVVLDNPSPFLNPFQFELTFECIEELKEDLEWKMIYVGSAETEEHDQVLDTI 60
           MAKV++ +V V +NP+ FL P +FE+TFEC EE+ +DL+WK+IYVGSAE  ++DQVLD++
Sbjct: 1   MAKVNLISVNVHENPTSFLAPLRFEVTFECTEEITDDLDWKIIYVGSAECSDYDQVLDSV 60

Query: 61  YVGPIPEGRHMFVFQAPPPDVTKIPENDALGVTVVLLTCSYRGQEFVRVGYFINNDYSES 120
            VGP+P GRHMFVF+A PPD  KI + D LGVTV+LLTCSYR +EFVRVGY++NN+Y+  
Sbjct: 61  LVGPVPIGRHMFVFEANPPDPKKILDQDILGVTVLLLTCSYREREFVRVGYYVNNEYNNE 120

Query: 121 EPELRENTPAKP 132
             E++EN P+KP
Sbjct: 121 --EMKENPPSKP 130


>SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 8   NVVVLDNPSPFLNPFQFELTFECIEELKEDLEWKMI-YVGSAETEEHDQVLDTIYVG-PI 65
           N  V  +P P   P  +    + ++ L E   W+ + +V  + T+EH+Q  D    G P 
Sbjct: 171 NANVSSSPRPKSLPPSYN---KSLDNLHEQF-WRSVQHVQRSNTKEHEQTEDDPKSGYPA 226

Query: 66  PEGRHMFVFQAPPPDVTKIP 85
           P+     V + P P+V K+P
Sbjct: 227 PDDHTPEVVECPAPNVVKLP 246


>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
          Length = 427

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 79  PDVTKIPENDALGVTVVLLTCSYRGQEFVRVGYFINNDYSESEPELRENTPAKPQ 133
           P V ++ EN A  ++ V   C   G+E  ++ Y   + YS S+P L  +T +  Q
Sbjct: 296 PGVDQLGENRAK-LSAVNYDCELAGEEAAKIWYNQGSHYSYSDPRLNSDTDSFTQ 349


>SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)
          Length = 637

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 31  IEELKE-DLEWKMIYVGSAETEEHDQVLDTIYVGPIPEGRHMFVFQAP 77
           +E+++E DL +  +   + ET + +     I +GP PE R +++ ++P
Sbjct: 532 VEDVQELDLRFVFLQTLAKETHKFESHYVDILIGPYPESRDVYIARSP 579


>SB_30226| Best HMM Match : Lactamase_B (HMM E-Value=8.4e-19)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 161 GTAIDAGDSNLEISHAPSNDSYSASFNAESQISGIEFQGSL 201
           G  ID GD  LE+ H P +     S     Q SG+ F G +
Sbjct: 176 GNIIDLGDKKLEVLHIPGHT--PGSIALFEQTSGLLFTGDM 214


>SB_15635| Best HMM Match : DCP1 (HMM E-Value=0.16)
          Length = 208

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 120 SEPELRENTPAKPQFDKVVRNILASAPRVTRFKIN 154
           S PEL+ N  A  + D+ V NI+ +A +V  +K N
Sbjct: 10  STPELKLNLNAIKKCDQFVVNIIDTASQVALYKFN 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,386
Number of Sequences: 59808
Number of extensions: 332578
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 6
length of query: 216
length of database: 16,821,457
effective HSP length: 79
effective length of query: 137
effective length of database: 12,096,625
effective search space: 1657237625
effective search space used: 1657237625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)