GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001637-TA|BGIBMGA001637-PA|IPR006818|Anti-silencing
protein, ASF1-like
         (216 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66740.1 68414.m07586 ASF1-like anti-silencing protein, putat...   210   7e-55
At5g38110.1 68418.m04591 ASF1-like anti-silencing family protein...   208   2e-54
At4g03250.1 68417.m00444 homeobox-leucine zipper family protein ...    31   0.45 
At2g41700.1 68415.m05151 ABC transporter family protein similar ...    31   0.79 
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    29   2.4  
At5g45150.1 68418.m05543 ribonuclease III family protein similar...    29   3.2  
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER...    29   3.2  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     27   9.7  

>At1g66740.1 68414.m07586 ASF1-like anti-silencing protein, putative
           similar to SP|P32447 Anti-silencing protein 1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF04729: Anti-silencing protein, ASF1-like; supporting
           cDNA gi|27530935|dbj|AB078339.1|
          Length = 196

 Score =  210 bits (512), Expect = 7e-55
 Identities = 94/166 (56%), Positives = 126/166 (75%), Gaps = 2/166 (1%)

Query: 1   MAKVHITNVVVLDNPSPFLNPFQFELTFECIEELKEDLEWKMIYVGSAETEEHDQVLDTI 60
           M+ + ITNV VL NP+PF++PFQFE+++EC+  LK+DLEWK+IYVGSAE E +DQ+L+++
Sbjct: 1   MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  YVGPIPEGRHMFVFQAPPPDVTKIPENDALGVTVVLLTCSYRGQEFVRVGYFINNDYSES 120
            VGP+  G + FVFQA PPD +KI E D +GVTV+LLTCSY GQEF+RVGY++NNDY + 
Sbjct: 61  LVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDE 120

Query: 121 EPELRENTPAKPQFDKVVRNILASAPRVTRFKINWAEPDAGTAIDA 166
             +L+E  P K   DKV RNIL+  PRVT+F I++   +  TA  A
Sbjct: 121 --QLKEEPPTKVLIDKVQRNILSDKPRVTKFPIDFHPEEEQTAATA 164


>At5g38110.1 68418.m04591 ASF1-like anti-silencing family protein
           similar to SP|P32447 Anti-silencing protein 1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF04729: Anti-silencing protein, ASF1-like
          Length = 218

 Score =  208 bits (508), Expect = 2e-54
 Identities = 93/155 (60%), Positives = 119/155 (76%), Gaps = 2/155 (1%)

Query: 1   MAKVHITNVVVLDNPSPFLNPFQFELTFECIEELKEDLEWKMIYVGSAETEEHDQVLDTI 60
           M+ ++ITNV VLDNP+PF+NPFQFE+++EC+  LK+DLEWK+IYVGSAE E +DQVL+++
Sbjct: 1   MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESV 60

Query: 61  YVGPIPEGRHMFVFQAPPPDVTKIPENDALGVTVVLLTCSYRGQEFVRVGYFINNDYSES 120
            VGP+  G + FV QA  PD  KI E D +GVTV+LLTCSY  QEF+RVGY++NNDY + 
Sbjct: 61  LVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDE 120

Query: 121 EPELRENTPAKPQFDKVVRNILASAPRVTRFKINW 155
             +LRE  P K   DKV RNIL   PRVT+F IN+
Sbjct: 121 --QLREEPPTKVLIDKVQRNILTDKPRVTKFPINF 153


>At4g03250.1 68417.m00444 homeobox-leucine zipper family protein
           similar to homeobox transcription factor Hox7
           [Lycopersicon peruvianum] GI:19486;  contains Pfam
           PF00046: Homeobox domain
          Length = 476

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 175 HAPSNDSYSASFNAESQI--SGIEFQGSLSGYGDNSNSIAPME 215
           +AP + SYS     +SQI  SG+E   SLSG  +   S + M+
Sbjct: 434 YAPKSSSYSEILERKSQINRSGVELPSSLSGDDETDESSSSMD 476


>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 14/60 (23%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1   MAKVHITNVVVLDNPSPFLNPFQFELTFECIEELKEDLEWKMIYVGSAETEEHDQVLDTI 60
           +A +  + V++LD P+  ++P+   LT++ I+++K+    ++I + +   +E +++ D I
Sbjct: 630 IALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKG---RIILLTTHSMDEAEELGDRI 686


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 161 GTAIDAGDSNLEISHAPS-NDSYSASFNAESQISGIEFQGSLSGY 204
           G ++     N  +S   S N+ Y  S+ A S +SG+ F G+ +G+
Sbjct: 336 GVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLSFAGNTNGF 380


>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles PF00035:
           Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 18  FLNPFQFELTFE--CIEELKEDLEWKMIYVGSAETEEHDQVLDTIYVGPIP 66
           F NP   E+T E   I+E   D+EWK+      + +     + T+   P+P
Sbjct: 674 FENPLTEEMTQEQMVIDEDSLDVEWKLFETEELQIQTGSSSMSTVSENPLP 724


>At4g05310.1 68417.m00809 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 415

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 69  RHMFVFQAPPPDVTKIPENDALGVTVVLLTCSYRG-QEFVRVGY-FINNDYSESEPELRE 126
           R M V+ +P P + ++P N  + V V     + RG  +  + GY F +N+   +E +  E
Sbjct: 193 RQMLVYVSPYPGMNEVPTNILVQVKVTDEVKTLRGLMKLAQEGYIFTHNNQVLNEDQSYE 252

Query: 127 NTPAKPQFDKVV 138
               KP  D +V
Sbjct: 253 CNSVKP-LDTIV 263


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 24  FELTFECIEELKEDLEWKMIYVGSAETEE 52
           F+L F CIE+L   L  + I V +AE  E
Sbjct: 905 FQLLFSCIEKLLSSLNVESIVVPAAEEAE 933


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,629,572
Number of Sequences: 28952
Number of extensions: 244470
Number of successful extensions: 404
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 8
length of query: 216
length of database: 12,070,560
effective HSP length: 78
effective length of query: 138
effective length of database: 9,812,304
effective search space: 1354097952
effective search space used: 1354097952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)