GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001636-TA|BGIBMGA001636-PA|undefined
         (640 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   3.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   3.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   3.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   6.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   8.5  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)

Query: 453 NQRTASPN--KNSSNATIDFQFNEAIIGDNEKFIRSNNKNGDSD 494
           ++R+  PN   N   + +D Q NE++    E  +  N+KNGD D
Sbjct: 77  SKRSKRPNGDTNGDTSQVDDQ-NESL----EASVNENSKNGDDD 115


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 446 FSSTDSSNQRTASPNKNSSNATIDFQFNEAIIGD 479
           +SS  S NQ   +P   +SN++ DF F   +  D
Sbjct: 484 YSSESSQNQ--VAPTGENSNSSSDFNFLSNLAND 515



 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 277 SDNVTSEHQVFDAPAFQNDRIEVGLQNN 304
           SDN  S HQ + + + QN     G  +N
Sbjct: 474 SDNYNSFHQFYSSESSQNQVAPTGENSN 501


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 446 FSSTDSSNQRTASPNKNSSNATIDFQFNEAIIGD 479
           +SS  S NQ   +P   +SN++ DF F   +  D
Sbjct: 432 YSSESSQNQ--VAPTGENSNSSSDFNFLSNLAND 463



 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 277 SDNVTSEHQVFDAPAFQNDRIEVGLQNN 304
           SDN  S HQ + + + QN     G  +N
Sbjct: 422 SDNYNSFHQFYSSESSQNQVAPTGENSN 449


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 349 SQSEDPSHCAQNPNEEFISRCAKKTKCINLIDSQETIICSLPES 392
           S S      +Q  ++ F+S+   + KC +L + +E   C   ES
Sbjct: 387 STSSSTHTSSQQTSDSFLSKRNSEKKCGSLREIKEVSDCDSSES 430


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 601 EKVCIEIRCSEVLNKIVVGCMDGYS 625
           +K+C    C ++ N     C DGYS
Sbjct: 153 KKLCNNGTCEDIGNSHRCHCSDGYS 177


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,350
Number of Sequences: 317
Number of extensions: 5468
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 640
length of database: 114,650
effective HSP length: 61
effective length of query: 579
effective length of database: 95,313
effective search space: 55186227
effective search space used: 55186227
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)