Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001636-TA|BGIBMGA001636-PA|undefined
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0649 - 5497844-5499727 36 0.099
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 32 1.2
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 32 1.2
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 32 1.2
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 31 2.8
09_04_0652 - 19227686-19227926,19229368-19232294 31 3.7
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 30 4.9
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485... 29 8.6
>12_01_0649 - 5497844-5499727
Length = 627
Score = 35.9 bits (79), Expect = 0.099
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 327 DNTRDDYLSQSTFHESSQDRVPSQSEDPSHCAQNPNEEFISRCAKKTKCINLIDSQETII 386
+N + YL++ T +S DR + ++P++ N +++C + +C L+DS +
Sbjct: 479 ENLGELYLARLTA-KSFFDRFGGEDDEPAYYVMNDMMYDLAKCVSRGECARLVDSAD--F 535
Query: 387 CSLPESFNHYSQSQTQNFVIGEKLIQNIDTRNKNRQIDVTLCDN-NKEFIN 436
+ S H + + NF +G+ ++ + K R I V C + KE ++
Sbjct: 536 RHVNSSVRHINIAGINNFTVGD--VKELLRLKKLRTIIVEDCGHVQKEVVS 584
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 32.3 bits (70), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 332 DYLSQSTFHESSQDRVPSQSEDPSHCAQNPNEEFISRCAKKTKCINLIDSQETIICSLPE 391
+YL+Q +SS DR+ ED S N E F R K C+N + +LP
Sbjct: 3 NYLAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKACLNNKARNPVFVENLPA 62
Query: 392 SFNHYSQSQTQN 403
F + S+ ++
Sbjct: 63 EFIQTTDSRLRS 74
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 32.3 bits (70), Expect = 1.2
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 301 LQNNFIYPQKQNEEFLSDVLRTLNELDNTRDDYLSQSTFHESSQDRVPSQSEDPSHCAQN 360
L N ++ + EE L+ +N + + DY SQ+T S+ + + QN
Sbjct: 398 LPNVDLHLVRMTEEMLAPNTSEMNT--HNQGDYSSQATMPTSAGNSGQENPKRKRQKCQN 455
Query: 361 PNEEFISRCA-KKTKCINL 378
N + RC+ KK+KC+ L
Sbjct: 456 DNVDSCKRCSCKKSKCLKL 474
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 32.3 bits (70), Expect = 1.2
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 372 KTKCINLIDSQETIICSLPESFNHYSQSQT---QNFVIGEKLIQNIDTRNKNRQIDVTLC 428
K K + +D+ I S +SFNH Q N + + L NI K + D++ C
Sbjct: 554 KLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL-KTLPTNIGCLQKLQYFDLSGC 612
Query: 429 DNNKEFINQNNDVTDCLFSSTDSSNQRTASP 459
N E D++ LF + S ++ A P
Sbjct: 613 ANLNELPTSFGDLSSLLFLNLASCHELEALP 643
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 31.1 bits (67), Expect = 2.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 8 QSIGSKWKELKNSTINILHLTLFKADIFISFPLPTLALRISN 49
Q++G K +K +NI + T F+A +F+ + LP L + N
Sbjct: 756 QTMGKNGKVVKTKRLNITNKTGFRAYMFLKYKLPLEVLHLVN 797
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 30.7 bits (66), Expect = 3.7
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 321 RTLNELDNTRDDYLSQSTF-HESSQDR------VPSQSEDPSHCAQNPNEEFISRCAKKT 373
R + +L+N+ +Y S S H+S+Q + V S+ C+ + NE K
Sbjct: 797 REIRDLNNSAVEYTSSSKQPHDSAQHKDEHNVDVASEETTAPECSCD-NESASCSTTNKN 855
Query: 374 KCINLIDSQETIICSLPESFNHYSQSQTQNFVIGEKLIQNIDTRNKNRQ 422
+ + ++E + SLP S+TQ + GEK +++ TRN R+
Sbjct: 856 EAECGVGAEEIVTSSLP--------SETQRILPGEKDNEDVVTRNHGRR 896
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 30.3 bits (65), Expect = 4.9
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 290 PAFQNDRIEVGLQNNFIYPQKQNEEFLSDVLRTLNELDNTRDDYLSQSTFHESSQDRVPS 349
P F+ I V + +EE + D ++ +T ++ L ST E QD VP
Sbjct: 294 PEFKVQVINVDVSEEAELASDSSEELVQD------DVKSTSENSLEDSTTEELQQDDVPD 347
Query: 350 QSEDPSHCAQNPNEE-FISRCAKKTKCINLIDSQETIICSLPESFNHYSQSQTQNFVIGE 408
D + +++P + FIS N D+ +P N+ + + ++ G+
Sbjct: 348 GDSDSAEDSKSPEMKLFISGVVH-----NKEDAGAKSYVRVPAEINNLEKDSFELYIPGK 402
Query: 409 KLIQNI-DTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQ 454
+++ DT+ +++ E + +DV L+ +T SS++
Sbjct: 403 GSDRDLADTKAAKQKVADMAAKLASELM--PSDVAKALWGTTKSSSK 447
>06_01_0665 -
4855870-4855956,4856407-4856482,4856794-4856910,
4857062-4857127,4858578-4858670,4858788-4858909,
4859810-4860365,4860485-4860628,4860698-4860831,
4861003-4861100,4861172-4861353,4861464-4861540,
4862083-4862305,4862580-4862745,4862836-4863040,
4864981-4865199
Length = 854
Score = 29.5 bits (63), Expect = 8.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 436 NQNNDVTDCLFSSTDSSNQRTASPNKNSSNATID 469
+ N+D+TDC+ + D S + T + S N T +
Sbjct: 543 SNNDDITDCIDNIDDMSQEDTCGSSDTSGNGTAE 576
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,404
Number of Sequences: 37544
Number of extensions: 599457
Number of successful extensions: 1433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 8
length of query: 640
length of database: 14,793,348
effective HSP length: 87
effective length of query: 553
effective length of database: 11,527,020
effective search space: 6374442060
effective search space used: 6374442060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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