GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001636-TA|BGIBMGA001636-PA|undefined
         (640 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    29   0.089
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    28   0.27 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.27 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    25   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   4.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 0.089
 Identities = 20/82 (24%), Positives = 36/82 (43%)

Query: 412 QNIDTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQ 471
           QN + +N NRQ D    DN +    QN++  +    + +  N    + NK + N     +
Sbjct: 450 QNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNR 509

Query: 472 FNEAIIGDNEKFIRSNNKNGDS 493
            N+     N +    NN+N ++
Sbjct: 510 QNDNKRNGNRQNDNQNNQNDNN 531



 Score = 29.1 bits (62), Expect = 0.12
 Identities = 21/79 (26%), Positives = 33/79 (41%)

Query: 412 QNIDTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQ 471
           QN + +N NRQ D     N +    QN +  +    + +  N    + NK + N   D +
Sbjct: 455 QNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNK 514

Query: 472 FNEAIIGDNEKFIRSNNKN 490
            N     DN+     NN+N
Sbjct: 515 RNGNRQNDNQNNQNDNNRN 533



 Score = 27.5 bits (58), Expect = 0.36
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 412 QNIDTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQ 471
           QN D +N N+Q      DN +    QN +  +    + +  N    + N+ + N   D +
Sbjct: 445 QNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNK 504

Query: 472 FNEAIIGDNEKFIRSNNKNGDSDS 495
            N     DN+   R+ N+  D+ +
Sbjct: 505 QNGNRQNDNK---RNGNRQNDNQN 525



 Score = 26.6 bits (56), Expect = 0.63
 Identities = 19/78 (24%), Positives = 33/78 (42%)

Query: 412 QNIDTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQ 471
           QN + +N NRQ D     N +    QN +  +    + +  N    + NK + N   D Q
Sbjct: 465 QNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQ 524

Query: 472 FNEAIIGDNEKFIRSNNK 489
            N+     N+  +  ++K
Sbjct: 525 NNQNDNNRNDNQVHHSSK 542



 Score = 24.6 bits (51), Expect = 2.5
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 430 NNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQFNEAIIGDNEKFIRSNNK 489
           +N+   NQN D  +    + +  N    + NK + N   D + N     DN++    N +
Sbjct: 438 DNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQ--NGNRQ 495

Query: 490 NGDSDSMKAQ 499
           NG+  +   Q
Sbjct: 496 NGNKQNDNKQ 505



 Score = 23.4 bits (48), Expect = 5.8
 Identities = 15/66 (22%), Positives = 28/66 (42%)

Query: 430 NNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQFNEAIIGDNEKFIRSNNK 489
           +N+   NQN D  +    + ++ N    + NK + N   D + N+     N +     N 
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNG 482

Query: 490 NGDSDS 495
           N  +D+
Sbjct: 483 NRQNDN 488



 Score = 23.0 bits (47), Expect = 7.7
 Identities = 18/86 (20%), Positives = 34/86 (39%)

Query: 412 QNIDTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQ 471
           QN D +N + Q       +N+    QN +  +    + +  N    + NK + N   D +
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNK 489

Query: 472 FNEAIIGDNEKFIRSNNKNGDSDSMK 497
            N      N++     N N  +D+ +
Sbjct: 490 QNGNRQNGNKQNDNKQNGNRQNDNKR 515


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 409 KLIQNIDTRNKNRQIDVTLCDNNKEFINQNND---VTDCLFSSTDSS--NQRTASPNKNS 463
           K  +NID  N N  +D    +N    +   ND   V + L S   S   NQ  A    ++
Sbjct: 366 KFPRNIDEYNNN-DLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHA 424

Query: 464 SNATIDFQFNEAIIGDNEKFIRSNNKN 490
            N  ID++ N+  I + ++ I +   N
Sbjct: 425 KNTIIDYRNNDLSINEEKRTIENEQLN 451


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 1/25 (4%)

Query: 405 VIGE-KLIQNIDTRNKNRQIDVTLC 428
           ++GE K++QN D ++KN++++V  C
Sbjct: 585 ILGEAKVLQNFDIKDKNKKVNVAGC 609


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 447 SSTDSSNQRTASPNKNSSNATIDFQFNEAIIGDNEKFIRSNNKNGD 492
           S+  + N  T + N N++N   +   N A    N     +NN NGD
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271



 Score = 23.8 bits (49), Expect = 4.4
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 429 DNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQFNEAIIGDNEKFIRSNN 488
           ++ +  I+   +  +C  ++  +    T   N N+S  T       A   +N     +NN
Sbjct: 191 EHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNN 250

Query: 489 KNGDSDS 495
            NG +D+
Sbjct: 251 NNGANDN 257


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 450 DSSNQRTASPNKNSSNATIDFQFNEAIIGDNEKFIR 485
           D +  RT +   + S++  D Q +E  +GD++ F R
Sbjct: 8   DLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFR 43


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 412 QNIDTRNKNRQIDVTLCDNNKEFINQNNDVTDCLFSSTDSSNQRTASPNKNSSNATIDFQ 471
           +NI+   K++    T+  +++E IN +ND  +   +S +S+ ++  SP   S  +     
Sbjct: 549 ENIERFFKSKPPVATMYGSDEEIINSSND--EGGKTSPNSAVRKCMSPINGSGASGSGSA 606

Query: 472 FNEAIIGDNEKFIRSNNKNGDSDSMKAQK 500
            N +   +N+    S     ++ SM++ K
Sbjct: 607 ENLSSGSNNQTSSASRENTSNTTSMESFK 635


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,806
Number of Sequences: 429
Number of extensions: 7455
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 15
length of query: 640
length of database: 140,377
effective HSP length: 62
effective length of query: 578
effective length of database: 113,779
effective search space: 65764262
effective search space used: 65764262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)