GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001633-TA|BGIBMGA001633-PA|undefined
         (88 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    26   0.92 
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    24   3.7  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    23   6.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   6.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   6.5  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    23   8.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    23   8.6  

>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 0.92
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 36 LVTLGYDCLKSPYIEMVIMKSLGFPFE 62
          L T+G+  L+ P IE +  +S+ FP E
Sbjct: 13 LATIGFHHLRGPEIEHLFPESMDFPKE 39


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 47  PYIEMVIMKSLGFPFEHNRPNRNLYV 72
           PYIE  ++ ++G P  + +   ++YV
Sbjct: 402 PYIEQFVLPAIGIPDPNPKQIHDIYV 427


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 44  LKSPYIEMVIMKSLGFPFEHNRPNRN 69
           LK+  +   +  ++G P +H R NR+
Sbjct: 80  LKAAGVSRRVASTIGIPVDHRRRNRS 105


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)

Query: 38  TLGYDC-----LKSPYIEMVIMKSLGFPFE 62
           TL Y C     + SPY   + +K+L +PFE
Sbjct: 643 TLDYQCSSSNSVVSPYASGLTLKNLIYPFE 672


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 60  PFEHNRPNRNLYVDILVENIQPGKFENQL 88
           P +  RP ++  + +    I+P K EN L
Sbjct: 485 PRKRGRPRKSANISVTSSPIRPSKNENNL 513


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 61  FEHNRPNRNLYVDILVENIQP 81
           F HN+PN  + +     ++ P
Sbjct: 223 FSHNKPNNQISISTFYSSLDP 243


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 4   PGDTDHVLLFANPDGKRRCALKTEGHSVF 32
           P  +D + L  +PDGK  C    +G   F
Sbjct: 507 PIPSDVLSLAFHPDGKEVCVASLDGQLTF 535


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.142    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,972
Number of Sequences: 5004
Number of extensions: 16622
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 88
length of database: 2,362,478
effective HSP length: 61
effective length of query: 27
effective length of database: 2,057,234
effective search space: 55545318
effective search space used: 55545318
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)