GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001633-TA|BGIBMGA001633-PA|undefined
         (88 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0809 + 23351784-23352035,23352219-23352386,23353160-233532...    26   3.2  
01_05_0074 + 17901185-17901258,17901758-17901845,17902195-179023...    26   4.3  
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953...    25   5.7  
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172...    25   5.7  
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55...    25   7.5  
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    25   9.9  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 25   9.9  

>12_02_0809 +
           23351784-23352035,23352219-23352386,23353160-23353230,
           23353444-23353501,23354117-23354296,23354919-23355003,
           23355091-23355150,23355410-23355483,23355582-23355698
          Length = 354

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 30  SVFEPHLVTLGYDCLKSPYIEMVIMKSLGFPFEHN 64
           S+  PH VT G   LK  +++ + +  +G  FEH+
Sbjct: 228 SMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHH 262


>01_05_0074 +
           17901185-17901258,17901758-17901845,17902195-17902332,
           17902820-17903044,17903176-17903358,17903453-17903697,
           17905640-17905685,17905784-17905876
          Length = 363

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 32  FEPHLVTLGYDCL-KSPYIEMVIMKSLGFPFEHNRPNRNLYVDILVENIQP 81
           F P        C+ K P   M   + L  PF     +++L + ILVE+++P
Sbjct: 307 FSPEFCAFISSCIQKDPAERMSASELLNHPFIKKFEDKDLDLRILVESLEP 357


>09_04_0439 -
           17594131-17594271,17595018-17595100,17595199-17595355,
           17595438-17595576,17595668-17595720,17596150-17596257,
           17596345-17596413,17596505-17596570,17596651-17596794,
           17597372-17597455,17597539-17597637,17597753-17597875,
           17598283-17598831
          Length = 604

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 44  LKSPYIEMVIMKSLG--FPFEHNRPNRNLYV 72
           L S Y++ ++M+SLG  F  + NR N+ L V
Sbjct: 391 LLSRYLQQLVMESLGKEFDLDGNRVNQGLTV 421


>08_02_1017 -
           23616244-23616381,23616471-23616537,23617160-23617238,
           23617330-23617486,23617581-23617719,23617820-23617872,
           23618037-23618120,23618291-23618359,23618488-23618553,
           23618657-23618800,23619331-23619414,23619498-23619596,
           23620097-23620219,23620745-23621290
          Length = 615

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 44  LKSPYIEMVIMKSLG--FPFEHNRPNRNLYV 72
           L S Y++ ++M+SLG  F  + NR N+ L V
Sbjct: 382 LLSRYLQQLVMESLGKEFDLDGNRVNQGLTV 412


>08_01_0077 +
           546473-546512,546739-547013,547772-547885,548002-550245
          Length = 890

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 9   HVLLFANPDGKRRCALKTEGHSVFEPHLVTLGYDCLKSPYIEMV 52
           HVL   NP+ K   A      SV E + V +G      P ++++
Sbjct: 644 HVLETGNPEAKENSAATLFSLSVIEENKVRIGRSGAIKPLVDLL 687


>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 11  LLFANPDGKRRCALKTEGHSVFEPHLVTLGYDCLKSPY 48
           ++F   DG+  C + T  H     HL ++    ++ PY
Sbjct: 260 VIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPY 297


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 52  VIMKSLGFPFEHNR--PNRNLYVDI 74
           V+ K +  P+ ++R  PN N Y+DI
Sbjct: 119 VVAKGIPIPYNYDRNGPNENQYLDI 143


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.142    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,578
Number of Sequences: 37544
Number of extensions: 100300
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 7
length of query: 88
length of database: 14,793,348
effective HSP length: 67
effective length of query: 21
effective length of database: 12,277,900
effective search space: 257835900
effective search space used: 257835900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)