GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001633-TA|BGIBMGA001633-PA|undefined
         (88 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    26   2.7  
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    25   4.7  
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ...    25   4.7  
At1g65290.1 68414.m07403 acyl carrier family protein / ACP famil...    25   8.2  

>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 32   FEPHL--VTLGYDCLKSPYIEMVIMKSLGFPFEHNRPNRNLYVDIL 75
            F+ HL  + LG+  L SP         LGF  EH  P  NL  D L
Sbjct: 1806 FQSHLTDIKLGFGDLASPLPLFEPSDHLGFRSEHFPPMANLCTDNL 1851


>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 18  GKRRCALKTEGHSVFEPHL---VTLGYDCLKSPYIEMVIMKSLGFP 60
           G+ R AL ++ HS  EP L   V L Y   K P I+   + S  FP
Sbjct: 140 GRLRSALVSQNHSRVEPSLEPQVLLVYPPDKQPPIKYKDLHSFCFP 185


>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 874

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 31  VFEPHLVTLGYDCLKSPYIEMVIMKS 56
           VF PHL TL   CL  P IE +I +S
Sbjct: 755 VFAPHLATLYVVCL--PDIEHIISRS 778


>At1g65290.1 68414.m07403 acyl carrier family protein / ACP family
           protein similar to SP|P53665 Acyl carrier protein,
           mitochondrial precursor (ACP) (NADH-ubiquinone
           oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
           thaliana}; contains InterPro accession IPR003881:
           Isochorismatase
          Length = 126

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 39  LGYDCLKSPYIEMVIMKSLGFPFEHNRPNRNLYVDILVENI 79
           LG D L S  + M + +  GF    N  ++   +D+ V+ I
Sbjct: 79  LGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVDFI 119


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.142    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,505
Number of Sequences: 28952
Number of extensions: 85272
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 4
length of query: 88
length of database: 12,070,560
effective HSP length: 67
effective length of query: 21
effective length of database: 10,130,776
effective search space: 212746296
effective search space used: 212746296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)