Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
         (260 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 216 NSDAESRKRLEYFLPKSYKWSSEEYDRLGYLWF 248
           NS+A +R  + + + +S +  +E  DR G L+F
Sbjct: 290 NSEAAARSFVPFSIERSSQSVAEVMDRNGVLFF 322


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 24  LQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRR 64
           L H T   Q+ LD ++++ R+ +K+      Y KL +E+R+
Sbjct: 371 LGHATNLIQS-LDSSRRQYREKVKQVEEYMAYRKLPREMRQ 410


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 24  LQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRR 64
           L H T   Q+ LD ++++ R+ +K+      Y KL +E+R+
Sbjct: 339 LGHATNLIQS-LDSSRRQYREKVKQVEEYMAYRKLPREMRQ 378


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 10/44 (22%)

Query: 30  YPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRRVPFYVIDKD 73
           Y   +L +N++      K+TI NE  N++YK     P Y IDK+
Sbjct: 431 YRNNDLSINEE------KRTIENEQLNRMYKS---YPNY-IDKE 464


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,671
Number of Sequences: 429
Number of extensions: 3372
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 260
length of database: 140,377
effective HSP length: 56
effective length of query: 204
effective length of database: 116,353
effective search space: 23736012
effective search space used: 23736012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)