GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    27   3.6  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   4.8  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   6.3  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   8.3  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   8.3  

>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
          8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 39 KQRLRDLLKKTILNEIYNKLYKEVRRVPFYVIDKDYI 75
          K   +D+ +K + NEI+ +  KE +++     D+D +
Sbjct: 4  KINYKDITQKEMFNEIFKEYVKEEKQIDLGTCDQDSV 40


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 202 DSKHMYTQGRTRYLNSDAESRKRLEYFLPKSYKWS 236
           + ++   Q  T Y NSD  + K+LE F+  +  +S
Sbjct: 161 EEQNSLLQSNTTYTNSDLPASKQLESFISMNLSYS 195


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 44  DLLKKTILNEIYNKLYKEVRRVPFYVI 70
           D+L   I  EIY K+    R  P++V+
Sbjct: 135 DILSACIPKEIYEKMLSRARMYPYFVL 161


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 203 SKHMYTQ-GRTRYLNSDAESRKRLEYFLPKSY-KWSSEEY 240
           SK +YT  G    +  + E+RKR +YFL   + +W    Y
Sbjct: 75  SKELYTLLGLIVNILRNTETRKRYDYFLKNGFPRWKGTGY 114


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 213 RYLNSDAESRKRLEYFLPKSYKWSSEEYDRLGYLWF-NGP 251
           +Y+       K  EY  PK +++  E  ++LG+L+  +GP
Sbjct: 302 QYMRPTKRHLKVQEYVHPKKFEYWKEVAEKLGFLYVASGP 341


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 115 LARGRPRNGLNDEIKKEYFR 134
           LA G P++  +D+IK+ Y+R
Sbjct: 11  LALGLPKDATSDQIKESYYR 30


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,072
Number of Sequences: 5004
Number of extensions: 48259
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 6
length of query: 260
length of database: 2,362,478
effective HSP length: 71
effective length of query: 189
effective length of database: 2,007,194
effective search space: 379359666
effective search space used: 379359666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)