GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0253 + 16116614-16116671,16117194-16117258,16117596-161176...    30   1.6  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    30   2.1  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    30   2.1  
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300...    29   2.8  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    29   2.8  
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583...    29   3.7  
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595...    29   5.0  

>09_04_0253 +
           16116614-16116671,16117194-16117258,16117596-16117663,
           16120032-16120138,16120429-16120478,16120552-16120634,
           16120708-16120800,16122349-16122379,16122428-16122521,
           16122563-16122612
          Length = 232

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 88  TDHIDITDIDFPNKYDRFGDEYIDLSDLARG 118
           T H+ +TD+D+ NK +   DE  D+ DLA G
Sbjct: 110 TCHVIVTDVDYYNKLEDPVDEENDMLDLAFG 140


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 36  DVNKQRLRDLLK---KTILNEIYNKLYKEVRRVPFYVIDKDYIKLDNTDIPLYYVTDHID 92
           D+NK  +R  L+   +     +YN   ++VR   ++     YIK ++ D+P +Y  D + 
Sbjct: 309 DINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLGVYHTPMIMYIKTEDPDLPAFYY-DPL- 366

Query: 93  ITDIDFPNKYDR 104
           I  I   NK DR
Sbjct: 367 INPITSTNKVDR 378


>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 11  FLKYNYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEI 54
           FLK N   YLW +L       QTNL+   + L DL+++T++ +I
Sbjct: 407 FLKENVV-YLWISLGFLKRTSQTNLETIARCLNDLMQRTMVQKI 449


>09_06_0129 -
           21028528-21028575,21029559-21029654,21029989-21030070,
           21030394-21030472,21030946-21031042,21031506-21031593,
           21033326-21033687
          Length = 283

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 72  KDYIKLDNTDIPLYYVTDHIDITDIDFPNKYDRFGDEYID 111
           K Y  L NT +    VT  +D+ D D  N + +F   Y+D
Sbjct: 208 KVYGYLTNTKVKFIMVTTDLDVKDADARNFFRKFHAAYVD 247


>05_01_0460 -
           3644229-3644420,3644623-3644865,3644959-3645237,
           3645328-3645525,3645614-3646249,3646352-3646606,
           3646718-3646824,3646909-3650705,3650816-3651305,
           3652043-3652433,3652621-3652713,3652818-3652941,
           3653871-3654118
          Length = 2350

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 36  DVNKQRLRDLLK---KTILNEIYNKLYKEVRRVPFYVIDKDYIKLDNTDIPLYYVTDHID 92
           D+NK  +R  L+   +     +YN   ++VR   ++     YIK D+ D+P +Y  D + 
Sbjct: 309 DINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLGVYHTPMIMYIKTDDPDLPAFYY-DPL- 366

Query: 93  ITDIDFPNKYDR 104
           I  I   +K DR
Sbjct: 367 INPITSTSKVDR 378


>07_03_1124 +
          24157441-24157483,24157989-24158020,24158135-24158353,
          24158553-24158634,24158726-24158898
          Length = 182

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 23 NLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIY 55
          +L  Q  +P+ NLD N+     L++KT+LN I+
Sbjct: 2  DLPQQQQHPEINLDENRGARVMLMEKTLLNPIF 34


>07_03_0478 +
           18556773-18556883,18557219-18557318,18557807-18559513,
           18559709-18560094,18560175-18560246,18560366-18560455
          Length = 821

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 53  EIYNKLYKEVRRVPFYVIDKDYIKLD-NTDIPLYYVTDHIDIT-DIDFPNKYDRFGDEYI 110
           EI+ K   E+    F+    +Y  LD N  +  Y V+DHID T  +D+   YD   D+ +
Sbjct: 575 EIFQKFLDEIGH-SFHC---NYSILDRNESVVTYIVSDHIDETKKVDYKVAYDNVEDDIL 630

Query: 111 DLSDL 115
            L  L
Sbjct: 631 CLCRL 635


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,387,472
Number of Sequences: 37544
Number of extensions: 247109
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 9
length of query: 260
length of database: 14,793,348
effective HSP length: 81
effective length of query: 179
effective length of database: 11,752,284
effective search space: 2103658836
effective search space used: 2103658836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)