Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
(260 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55814| Best HMM Match : zf-AD (HMM E-Value=1.9) 30 1.7
SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 29 2.9
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15) 29 5.1
SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27) 28 6.7
SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6) 28 8.8
SB_33293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 8.8
>SB_55814| Best HMM Match : zf-AD (HMM E-Value=1.9)
Length = 266
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 19 YLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYK---EVRRVPFYVIDKDYI 75
++W Q++T P LD+ +RL D+ + EI+N L K E+ ++ Y KD
Sbjct: 104 FMWL-YQNETD-PTLFLDIFSKRLNDMYFQKWHGEIFNDLMKNSNEMNKLRTYRTFKDKY 161
Query: 76 KLDNTDIPLYYVTDHIDITDIDFPN 100
+L+N + + V + +T + N
Sbjct: 162 ELENYLVAIPNVKHRVALTKLRISN 186
>SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 204 KHMYTQGRTRYLNSDAESRKRLEYF 228
+H +T GR R +NSD + KR +YF
Sbjct: 331 RHKFTSGRLRKINSDIFNGKREKYF 355
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 107 DEYIDLSDLARGRPRNGLNDEIKKEYFRRNQR 138
DE+ID+ G R+ L DE+ +Y +RN++
Sbjct: 250 DEFIDVKVSLLGEMRSNLKDEVFSDYEKRNKQ 281
>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 20 LWPNLQHQTGYPQTNLDVNKQRLR 43
LWPN H+ GY + L +K+R R
Sbjct: 1162 LWPNQFHRHGYKEIRLAAHKRRCR 1185
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 69 VIDKDYIKLDNTDIPLYYVTDHIDITDIDFPNKYDRFGDEYIDLSD 114
V D DY D+ D Y D+ DI D D + YD D D D
Sbjct: 660 VNDDDYDDYDDYDDNDYDDDDYDDINDYDVNDDYDNMKDMMNDYDD 705
>SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15)
Length = 150
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 102 YDRFGDEYID---LSDLARGRPRNGLNDEIKK 130
YD+ GDE ID L ++ RG +N N E+KK
Sbjct: 20 YDKQGDEKIDSSQLGEVLRGLGQNPTNAEVKK 51
>SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27)
Length = 286
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 13 KYNYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRRVPFYVIDK 72
K+N N L+PN + + P + + K L K + N + L ++ F+ +
Sbjct: 16 KHNANHLLYPNFRPASNLPMVSKVIEKAVAEQLTKHIVSNNLDVSLQSSYKK--FHSTET 73
Query: 73 DYIKLDN 79
IK+ N
Sbjct: 74 ALIKVQN 80
>SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6)
Length = 367
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 13 KYNYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRRVPFYVIDK 72
K+N N L+PN + + P + + K L K + N + L ++ F+ +
Sbjct: 167 KHNANHLLYPNFRPVSNLPMVSKVIKKAVAEQLTKHIVSNNLDVSLQSSYKK--FHSTET 224
Query: 73 DYIKLDN 79
IK+ N
Sbjct: 225 ALIKVQN 231
>SB_33293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 13 KYNYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRRVPFYVIDK 72
K+N N L+PN + + P + + K L K + N + L ++ F+ +
Sbjct: 16 KHNANHLLYPNFRPVSNLPMVSKVIEKAVAEQLTKHIVSNNLDVSLQSSYKK--FHSTET 73
Query: 73 DYIKLDN 79
IK+ N
Sbjct: 74 ALIKVQN 80
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 13 KYNYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRRVPFYVIDK 72
K+N N L+PN + + P + + K L K + N + L ++ F+ +
Sbjct: 2268 KHNANHLLYPNFRPVSNLPMVSKVIKKAVAEQLTKHIVSNNLDVSLQSSYKK--FHSTET 2325
Query: 73 DYIKLDN 79
IK+ N
Sbjct: 2326 ALIKVQN 2332
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 82 IPLYYVTDHIDITDIDFPNKYDRFGDEYIDLSDLARGRPRNGLNDEIKK 130
I + +T+ I IT+ PN DR +EYI ++ G D +KK
Sbjct: 45 IIIIIITNIIIITNTKGPNSRDRKSEEYIQQKMVSLTSMTKGQKDMLKK 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.141 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,356
Number of Sequences: 59808
Number of extensions: 315099
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 11
length of query: 260
length of database: 16,821,457
effective HSP length: 81
effective length of query: 179
effective length of database: 11,977,009
effective search space: 2143884611
effective search space used: 2143884611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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