GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
         (260 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   6.7  
AJ010193-1|CAA09032.1|  684|Anopheles gambiae prophenoloxidase p...    23   8.8  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 7    PSDPFLKYN---YNRYLWPNLQHQTGYPQTNLDVNKQRL 42
            P +P  +Y     + Y  P+LQ+Q    +  L+ NK  L
Sbjct: 1048 PQEPLKEYTEEELDSYKLPDLQYQISILEEKLNANKPNL 1086


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 13/77 (16%)

Query: 7    PSDPFLK-YNYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNKLYKEVRRV 65
            P +P+L   NYN  + P  + Q   P +NL   ++ +  L    +L  I++      +  
Sbjct: 1103 PEEPYLDGINYN-CVAPGKRFQ---PMSNLSGGEKTIAAL---ALLFAIHS-----FQPA 1150

Query: 66   PFYVIDKDYIKLDNTDI 82
            PF+V+D+    LDNT+I
Sbjct: 1151 PFFVLDEIDAALDNTNI 1167


>AJ010193-1|CAA09032.1|  684|Anopheles gambiae prophenoloxidase
           protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 92  DITDIDFPNKYDRFGDEYIDLSDLARGRPRNGLNDE 127
           D  D++ P+  + F D Y+D +   + R    L D+
Sbjct: 138 DTRDVEIPSFLELFPDRYVDPAVFPQLREEGTLVDQ 173


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,703
Number of Sequences: 2123
Number of extensions: 9714
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 260
length of database: 516,269
effective HSP length: 63
effective length of query: 197
effective length of database: 382,520
effective search space: 75356440
effective search space used: 75356440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)