Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
(260 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 31 1.1
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 31 1.1
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 31 1.1
AC006695-10|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 31 1.1
AC006695-9|AAK73902.2| 576|Caenorhabditis elegans Receptor medi... 31 1.1
AC006695-8|AAF39978.1| 786|Caenorhabditis elegans Receptor medi... 31 1.1
AC006695-7|AAL65796.1| 613|Caenorhabditis elegans Receptor medi... 31 1.1
AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor medi... 31 1.1
AC006695-5|AAF39980.1| 589|Caenorhabditis elegans Receptor medi... 31 1.1
AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical ... 30 1.4
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 296 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 355
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 356 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 389
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 542 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 601
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 602 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 635
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 278 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 337
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 338 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 371
>AC006695-10|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 262 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 321
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 322 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 355
>AC006695-9|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 278 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 337
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 338 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 371
>AC006695-8|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 493 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 552
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 553 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 586
>AC006695-7|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 320 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 379
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 380 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 413
>AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 542 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 601
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 602 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 635
>AC006695-5|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 LKYNYNRYLWPNLQHQTGYPQTNLDVNK--QRLRDLLKKTILNEIYNKLYKEVRRVPFYV 69
L Y+ NR L+ + QH L N ++L DL+K+ L +++ + E+R+ +
Sbjct: 296 LHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAYIIAELRKQMPSM 355
Query: 70 IDKDYIKLD---NTDIPLYYVTDHIDITDIDFPN 100
I KD K D N D + +I+ DFP+
Sbjct: 356 IGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPD 389
>AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical
protein C08E3.8 protein.
Length = 431
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 61 EVRRVPFYVIDKDYIKLDNTDIPLYYVTDHIDITDIDFPNKYDR-FGDEYIDLSDLA 116
E R F+V D+DYI+L D+ L ++ + F N ++ ++ID +++A
Sbjct: 166 EDNRKEFFVTDEDYIELGVKDLKLIMENQNVQLKKFQFSNGSNQDTQKKFIDRAEIA 222
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 15 NYNRYLWPNLQHQTGYPQTNLDVNKQRLRDLLKKTILNEIYNK----LYKEVRRV 65
N + WP Q+ P + VN++ D+ KK +N +N+ LYK +V
Sbjct: 52 NGTGFFWPGTCEQSDCPDGWISVNRKINNDVEKKWCINMFWNQATNDLYKTSEKV 106
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.141 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,820,838
Number of Sequences: 27539
Number of extensions: 241489
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 11
length of query: 260
length of database: 12,573,161
effective HSP length: 80
effective length of query: 180
effective length of database: 10,370,041
effective search space: 1866607380
effective search space used: 1866607380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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