GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001631-TA|BGIBMGA001631-PA|undefined
         (260 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf...    33   0.19 
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    32   0.34 
At2g20930.1 68415.m02468 expressed protein                             31   1.0  
At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase f...    29   4.1  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    29   4.1  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    29   4.1  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    28   5.5  

>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 334

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 99  PNKYDRFGDEYIDLSDLARGRPRNGLNDEIKK 130
           P KY  FG E  + SD +R  PR  LNDE+ K
Sbjct: 104 PVKYKVFGGENKENSDPSRRNPRKNLNDEVLK 135


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 36  DVNKQRLRDLLK---KTILNEIYNKLYKEVRRVPFYVIDKDYIKLDNTDIPLYYVTDHI- 91
           D+NK  +R  L+   K     +YN   ++V+   ++     YIK ++ D+P +Y    I 
Sbjct: 292 DINKLIIRSPLRTEYKVAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYDPLIH 351

Query: 92  DITDIDFPNKYDRFGDEYIDLSD 114
            I++ +  NK  R  + Y D  D
Sbjct: 352 PISNSNNTNKEQRKSNGYDDDGD 374


>At2g20930.1 68415.m02468 expressed protein
          Length = 140

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 34  NLDVNKQRLRDLLKK-TILNEIY-NKLYKEVRRVPFYVIDKDYIKLDNTDIPLYYVTDHI 91
           +LDV ++R+ +  K  T LNE +   LY  V         K Y  L NT +    VT  +
Sbjct: 36  SLDVIEERVNNPKKSGTTLNEAFLGLLYPTVNY-------KVYGYLTNTKVKFILVTTDL 88

Query: 92  DITDIDFPNKYDRFGDEYID 111
           D+ D D  + + +F   Y+D
Sbjct: 89  DVRDTDVRSFFRKFHAAYVD 108


>At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase
           family protein
          Length = 356

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 57  KLYKEVRRVPFYVIDKDYIK-LDNTDIPLYYVTDHIDITDI 96
           KL+  +   PFY I+ + ++ L ++D P  YV++H    DI
Sbjct: 168 KLWASISIYPFYKINIEGLENLPSSDTPAVYVSNHQSFLDI 208


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 200 KVDSKHMYTQGRTRYLNSDAESRKRLEYFLPKSYKWSSEEYDR 242
           +V+ +H Y + R RY++ ++E+R R E   P+     SE++ R
Sbjct: 487 RVEKEHRYDERRHRYVDMESENRNRSEK-KPRYDDRDSEKHHR 528


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 107 DEYIDLSDLARGRPRNGLNDEIKKEY 132
           DEY+D+ D  + RP NGL   +  ++
Sbjct: 262 DEYLDIGDDIQRRPNNGLTSSVSCDF 287


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 36  DVNKQRLRDLLK---KTILNEIYNKLYKEVRRVPFYVIDKDYIKLDNTDIPLYYVTDHID 92
           D+NK  +R  L+   +     +YN   ++V+   ++     YIK ++ D+P +Y  D + 
Sbjct: 344 DINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMIMYIKTEDPDLPAFYY-DPL- 401

Query: 93  ITDIDFPNKYDRFGDEYIDLSDLA 116
           I  I   NK  R    Y D  D A
Sbjct: 402 IHPISNTNKEKRERKVYDDEDDFA 425


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,469,585
Number of Sequences: 28952
Number of extensions: 221502
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 9
length of query: 260
length of database: 12,070,560
effective HSP length: 80
effective length of query: 180
effective length of database: 9,754,400
effective search space: 1755792000
effective search space used: 1755792000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)