GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001630-TA|BGIBMGA001630-PA|IPR002018|Carboxylesterase,
type B
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    71   4e-13
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    37   0.005
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    29   1.9  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    27   4.4  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   4.4  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    27   5.8  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   7.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)

Query: 96  CLNLNIYVPKTATPRNLLPVMVWIHGGGFRHGSG-NWRDYSPEFLIKQN----VVLVFMN 150
           CL LNI+VP    P    PV+ +IHGG  + G+  ++R   P+ L         +LV   
Sbjct: 82  CLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILVSPG 141

Query: 151 YRLGPYGFLC----LEDSRVPGNQGLKDQHLALEWVNRNINAFGGDSSRVTLFGESGGAI 206
           +RL  +GFL     LE+     N G  DQ L LEW  ++I +FGG+   + + G S G+ 
Sbjct: 142 HRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGSY 201

Query: 207 SVHWHLL-----ANHEKLFHKAILQSGSAYMPGTTVKPDNTVPFKIAAKMGFVTE 256
           S  + L+         ++  +A+L S    +   +V+       ++A K G   E
Sbjct: 202 SALFQLIYETYHPEANQIIKRALLLSNGLSVQPKSVEESQIQFNELAQKFGIPLE 256


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 101 IYVPKTATPRNLLPVMVWIHGGGFRHGSGNWRDYSPEFLIKQ-NVVLVFMNYRLGPYGFL 159
           I+ P    P    P  +W HGGG+  G+ N  +     + +Q   V+V ++YRL P    
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLAP---- 143

Query: 160 CLEDSRVPGNQGLKDQHLALEWVNRNINAFGGDSSRVTLFGESGGA--ISVHWHLLANHE 217
             ED   P    + D   AL +   N +  G + +++ + G S G    +V  H +A   
Sbjct: 144 --ED---PFPACIDDGWEALLYCYENADTLGINPNKIAVGGSSAGGNIAAVLSHKVAASP 198

Query: 218 KLFHKAILQ 226
             F   +LQ
Sbjct: 199 ANFPPLVLQ 207


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 162 EDSRVPGNQGLKDQHLALEWVNRNINAFGGDSSRVTLFGESGGAISVHWHLLANHEKLFH 221
           E SR P    LKD   A   + RNI  +G          E+G A       + + E L  
Sbjct: 19  ESSRSPSVTDLKDHSKAKRTLCRNILLYGS-----CKHSENGCAFRHDGPFIPSSENLEQ 73

Query: 222 KAILQSGSAYMPGTTVKPDNTVPFKIAAKMGFVTENLDLALSFLAKQDPPV 272
            ++ +  +A     + +P   +P K A    FV ++ + +L FL+++  PV
Sbjct: 74  YSVKKKLNA--ASASFQPVRALPVKAAGAAVFVPKSQEKSL-FLSRERTPV 121


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 430 GDELGYLFGTDLITGIPNDEDVHMIEKMTTLWGNFAKYGWKPNPGDLSTTTRE 482
           GD   YL GT +IT IP +ED   +E    L+G       +    D+S T+ E
Sbjct: 111 GDIPVYLSGTCIITNIPEEEDSSDLEN-DFLYGADEFSSDEEEMDDISVTSSE 162


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 274 VRNANALVDEGLIKLRPCVEKQFEGTHRFITDYAKNLQV 312
           +R+ + +VDE LIK    VEK  EG  +  +  A  L++
Sbjct: 141 IRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEM 179


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 305 DYAKNLQVDEIQDIPMIFGFNERENLVYYQSQFLKVPLK 343
           D  K +     +D  ++ G +ERENLV Y  + LK+P +
Sbjct: 134 DIGKKIFASSSRDNILVLGCSERENLV-YDIRNLKLPFQ 171


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 129 GNWRDYSPEFLIKQNVVLVFMNYRL 153
           G+W+  S E +  +NV + + NY+L
Sbjct: 677 GSWQQKSMEGIFNKNVAIAYPNYKL 701


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,266
Number of Sequences: 5004
Number of extensions: 117110
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 7
length of query: 484
length of database: 2,362,478
effective HSP length: 75
effective length of query: 409
effective length of database: 1,987,178
effective search space: 812755802
effective search space used: 812755802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)