Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001628-TA|BGIBMGA001628-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR007087|Zinc finger, C2H2-type
(189 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 39 0.003
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 35 0.047
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 31 0.77
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 30 1.3
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 30 1.3
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 29 2.3
07_03_1548 + 27630988-27631049,27631632-27631767,27631904-276320... 29 3.1
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 29 3.1
04_03_0364 - 14948966-14949016,14949374-14949662,14949745-149499... 28 4.1
06_02_0221 - 13209197-13209247,13209605-13209893,13209976-132101... 28 5.4
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 28 5.4
11_01_0128 - 1043053-1043151,1043238-1043570,1043588-1043707,104... 27 7.2
03_05_0686 + 26753253-26753389,26753618-26753745,26754370-267551... 27 7.2
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 27 7.2
07_03_1285 + 25477542-25477625,25477776-25477832,25477973-254780... 27 9.5
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 27 9.5
06_03_1159 + 28084786-28085428,28085520-28086166 27 9.5
05_01_0298 - 2318644-2318861,2319838-2319964,2320934-2321038,232... 27 9.5
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 27 9.5
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 27 9.5
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 38 SKKYAKKHELIHRPDNPLRC--QHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGKK 95
S KY K+H+ +HR + P +C CP + + + ++H+ E+ A CG+
Sbjct: 830 SHKYLKRHQCVHRDERPFKCPWDGCP-MTFKWLWAQTEHIRVHTGERPYKCSAPD-CGQS 887
Query: 96 FDDMNVYFAHKKR 108
F ++ Y H+K+
Sbjct: 888 FRYVSDYSRHRKK 900
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 34.7 bits (76), Expect = 0.047
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 9 FVDVAT--EYKNVYTPEEPVTETVAVQNKSVSKKYAKKHELIHRPDNPLRCQHCPYIARN 66
FVDVA ++ +V+ + + + K V K+H LIH C H P +
Sbjct: 98 FVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPH-PGCGKA 156
Query: 67 YRM---LNSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKK 107
+ + L SH K H+ E V CGK+F + +H K
Sbjct: 157 FSLDFNLRSH-LKTHALENYHV-CPFPACGKRFTSDSKLKSHVK 198
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 58 QHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKK---RRKQCDE 114
++C + L H++ + VI C K F ++ AH K R CD
Sbjct: 358 ENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRHVVCDV 417
Query: 115 CGLEVCHQAMNRHK--HEKHGVKRKVR 139
CG + + RH+ HE V +VR
Sbjct: 418 CGTKQLKKNFKRHQRMHEGSCVTERVR 444
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 1 MSQDGPIVFVDVATEYKNVYTPEEPVTETVAVQNKSVSKKYAKKHELIHRPDNPL-RCQH 59
M+Q P +D+A + N E + A Q S AK ++ + N L RC+
Sbjct: 290 MNQTRPDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAK---MLKQQGNELHRCEQ 346
Query: 60 CPYIARNYRMLNSHQKKLHSNEKQRVIIACTL 91
A Y++ + K + S + + CTL
Sbjct: 347 YSEAAAKYKLAKDNLKSIPSQSAHSLQLVCTL 378
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 38 SKKYAKKHELIHRPDNPLRC--QHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTL--CG 93
S KY ++H+ IH D P +C + C +A + ++H+ ++ CT C
Sbjct: 576 SHKYLRRHQSIHNDDMPYKCPWEGCS-MAFKWSWDRGEHFQVHAGKRP---YKCTTPGCS 631
Query: 94 KKFDDMNVYFAHKKRRK 110
K + ++ + HK+R K
Sbjct: 632 KIYKFVSDFTRHKRRCK 648
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 70 LNSHQKKLHSNEKQRVIIACTLCGKKF-DDMNVYFAHKKRRKQCDECGL 117
+NS +K + I + T G K DD N A KK+R+ C ECG+
Sbjct: 489 VNSDMEKSYGGSS--TIPSATSDGNKASDDTNPVPAKKKKRRTCYECGI 535
>07_03_1548 +
27630988-27631049,27631632-27631767,27631904-27632041,
27632168-27632267,27632443-27632552
Length = 181
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 89 CTLCGKKFDDMNV--YFAHKKRRKQ-CDECGLEVCHQAMNRHKHEKH 132
C C ++ N+ + AH R Q C+ CG V + M+ H E H
Sbjct: 18 CAHCHREIPSPNIALHSAHCARNLQKCEHCGYMVPKKLMDEHYDENH 64
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 60 CPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKK---RRKQCDECG 116
C + + + H++ + V+ C K F ++ AH + + QCD CG
Sbjct: 161 CNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQCDICG 220
Query: 117 LEVCHQAMNRHKHEKHGVKRKVRGKDVFTCKICEWSSVNKVKVLLHI 163
+ + + RH V R K F + CE S NK + HI
Sbjct: 221 EKHLKKNIKRHLRAHEEVPSTERIKCSF--EGCECSFSNKSNLTKHI 265
>04_03_0364 -
14948966-14949016,14949374-14949662,14949745-14949915,
14949994-14950199
Length = 238
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 113 DECGLEVCH--QAMNRHKHEKHGVKRKVRGKDVFTCKICEW 151
D+CG VCH + + R K + K + C+ICEW
Sbjct: 197 DQCGFHVCHNMRLLYREKVKTLAEFEVKYDKYLNGCEICEW 237
>06_02_0221 -
13209197-13209247,13209605-13209893,13209976-13210146,
13210257-13211110,13211197-13211643,13211722-13212021,
13212130-13212450
Length = 810
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 113 DECGLEVCHQAMNRHKHE-KHGVKRKVR-GKDVFTCKICEW 151
D+CG VCH ++ + K + +V+ K + C+ICEW
Sbjct: 769 DQCGFHVCHNMRLLYRDKVKTLTEFEVKYDKYLNGCEICEW 809
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 150 EWSSVNKVKVLLHIIHHPEQDLSDCSFDLSVLKK--CQILP 188
E +N VKVL H + + S+ FD+S LKK Q+LP
Sbjct: 638 EVGEINGVKVLQHDLFTNDVVYSEIVFDMSSLKKDHLQLLP 678
>11_01_0128 -
1043053-1043151,1043238-1043570,1043588-1043707,
1043810-1043993,1044088-1044275,1044714-1044808,
1044884-1045003,1045232-1045350,1052717-1052799,
1052892-1053071
Length = 506
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 21 TPEEPVTETVAVQNKSVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQKKLHSN 80
T P T+++ KS + K +IH +P R H P A N + S Q+ ++
Sbjct: 105 TASPPTTKSLVTSPKSTDEH--KDRSIIHASSSPERSSHDPSAAANPALSASAQE--YTE 160
Query: 81 EKQRVIIAC 89
E + + C
Sbjct: 161 EGAQPLTGC 169
>03_05_0686 +
26753253-26753389,26753618-26753745,26754370-26755196,
26756016-26756690
Length = 588
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 70 LNSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKKRRKQCDECGL----EVCHQAMN 125
++ H + L S E +V C++CG KF M + + RK DE G E Q MN
Sbjct: 498 MSFHDETLPS-EGAKVAHFCSMCGPKFCSMKI---TEDIRKYADEHGYGTVEEAVIQGMN 553
Query: 126 RHKHEKHGVKRKVRGK 141
E ++ + G+
Sbjct: 554 AMSAEFSAARKTISGE 569
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 35 KSVSKKYAKKHELIHRPDNPLRC--QHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLC 92
K S KY +H +H D PL C + C +A + + ++H+ ++ V C
Sbjct: 1119 KFFSHKYLLQHRKVHTDDRPLTCPWKGC-NMAFKWPWARTEHLRVHTGDRPYVCHE-PGC 1176
Query: 93 GKKFDDMNVYFAHKKR 108
+ F ++ + HK++
Sbjct: 1177 AQTFRFVSDFSRHKRK 1192
>07_03_1285 +
25477542-25477625,25477776-25477832,25477973-25478040,
25478187-25478391,25478429-25478586,25478865-25478940,
25479065-25479124,25479186-25479236,25479663-25479741,
25480183-25480271
Length = 308
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 103 FAHKKRRKQCDECGLEVCHQAMNRHKH-EKHGVKRKVR 139
F +RR C CG +CH+ + H ++G+ VR
Sbjct: 22 FTTFRRRHHCRNCGRTLCHEHSSYHMALPQYGIYTDVR 59
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 25 PVTETVAVQNKSVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQKKLHSN 80
PV T Q + + K+ K + + + + C +C + R Y L H + N
Sbjct: 462 PVCTTQDTQRRRLEKE--KHGKTVDKETQKVSCNYCGKVVRTYNRLEHHLAGIRGN 515
>06_03_1159 + 28084786-28085428,28085520-28086166
Length = 429
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 111 QCDECGLEVC-HQAMNRHKHEKHGVKRKVRG 140
+C CG H A+ H H +H V V G
Sbjct: 191 RCHRCGDRFANHDALESHHHSRHAVTELVEG 221
>05_01_0298 -
2318644-2318861,2319838-2319964,2320934-2321038,
2321162-2321386
Length = 224
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 94 KKFDDMNVYFAHKKRRKQCDECGLEVCHQAM 124
+ F + + A+ K + CD CG+E+ H A+
Sbjct: 62 RHFASLPLARAYLKDERGCDICGVEITHNAL 92
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 3 QDGPIVFVDVATEYKNVYTPEEPVTETVAVQNKSVSKK--YAKKHELIHRPDNPLRCQHC 60
Q G IV + E E E V ++ S+K ++ K + I++P + L +C
Sbjct: 571 QTGRIVKTEERKEGGKGTEKEPDRIEKVPAYKEAPSQKPVFSSKEKYIYKPVSELDLSNC 630
Query: 61 PYIARNYRMLNSH 73
+YR+L H
Sbjct: 631 QRCTPSYRLLPKH 643
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 110 KQCDECGLEVCHQAMNRHKHEKHGVKRKVRGKDVFTCKICEWSSVNKVKVLLHIIHHPEQ 169
K E G+EV N H ++ H K +GKD S+ +KV + +
Sbjct: 290 KSVVEKGVEVAELTKNDHSNKDHHEIAKRKGKDEHIGS----QSLEMLKVRATLEERSDL 345
Query: 170 DLSDCSFDLSVLKKCQILPP 189
D FD VLK Q + P
Sbjct: 346 QTLD-DFDDEVLKNTQAIKP 364
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,759,500
Number of Sequences: 37544
Number of extensions: 228573
Number of successful extensions: 630
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 27
length of query: 189
length of database: 14,793,348
effective HSP length: 78
effective length of query: 111
effective length of database: 11,864,916
effective search space: 1317005676
effective search space used: 1317005676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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