GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001628-TA|BGIBMGA001628-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR007087|Zinc finger, C2H2-type
         (189 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    45   5e-07
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    38   6e-05
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    31   0.005
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    31   0.007
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.11 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.15 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.35 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.5  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 44.8 bits (101), Expect = 5e-07
 Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 7/157 (4%)

Query: 14  TEYKNVYTPEEPVTETVAVQNKSVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSH 73
           T +   +T E+P       ++ SV K+    H  IH  + P +C  C     +   L+ H
Sbjct: 108 TRHYRTHTGEKPYQCEYCSKSFSV-KENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRH 166

Query: 74  QKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAMNRHKHEKHG 133
             ++H+ E+      CT+C K F        H +          + C +     K  K  
Sbjct: 167 M-RIHTGERPH---KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVH 222

Query: 134 VKRKVRGKDVFTCKICEWS-SVNKVKVLLHIIHHPEQ 169
             R   G+  +TC IC  S   N V  L  + H+ E+
Sbjct: 223 T-RTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEK 258



 Score = 41.1 bits (92), Expect = 7e-06
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 16  YKNVYTPEEPVTETVAVQNKSVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQK 75
           ++ ++T E P    V  +    S K   +H  IH  + P +C  C         L  H +
Sbjct: 138 HRRIHTKERPYKCDVCERAFEHSGKL-HRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMR 196

Query: 76  KLHSNEKQRVIIACTLCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAMN-RHKHEKHGV 134
             H+ EK  V   C  CGK F        H +          ++C ++    H  + H V
Sbjct: 197 T-HTGEKPYV---CKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQV 252

Query: 135 KRKVRGKDVFTCKICEWSSVNKVKVLLHIIHHPEQDL 171
                G+ V+ C +C  +  +K  + LHI  H +  +
Sbjct: 253 AHY--GEKVYKCTLCHETFGSKKTMELHIKTHSDSSV 287



 Score = 27.9 bits (59), Expect = 0.065
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 89  CTLCGKKFDDMNVYFAHKKRR-------KQCDECGLEVCHQAMNRHKHEKHGVKRKVRGK 141
           C LC K FD  N+Y +H +          +C+ CG      A     +  H       G+
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTH------TGE 117

Query: 142 DVFTCKICEWSSVNKVKVLLHIIHHPEQDLSDC 174
             + C+ C  S   K  + +H   H ++    C
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKC 150



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 119 VCHQAMN-RHKHEKHGVKRKVRGKDVFTCKICEWSSVNKVKVLLHIIHHPEQDLSDCSF 176
           +C +A + ++ ++ H       G+D + C IC  +     ++  H   H  +    C +
Sbjct: 66  LCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEY 124


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 37.9 bits (84), Expect = 6e-05
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 39 KKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGK 94
          K + + H   H    P +C+ C Y   N  MLNSH K  HSN  Q     CT   K
Sbjct: 1  KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS-HSNVYQYRCANCTYATK 55



 Score = 26.2 bits (55), Expect = 0.20
 Identities = 17/60 (28%), Positives = 22/60 (36%)

Query: 128 KHEKHGVKRKVRGKDVFTCKICEWSSVNKVKVLLHIIHHPEQDLSDCSFDLSVLKKCQIL 187
           KH      R   G   F C+ C +S VNK  +  H+  H       C+      K C  L
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60



 Score = 25.4 bits (53), Expect = 0.35
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 34 NKSVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQKK 76
          NKS+   + K H  +++     RC +C Y  +    L  H +K
Sbjct: 28 NKSMLNSHLKSHSNVYQ----YRCANCTYATKYCHSLKLHLRK 66


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 31.5 bits (68), Expect = 0.005
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 17 KNVYTPEEPVTETVAVQNKSVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQKK 76
          +  +T E+P  E      +     + K H  +H  + P  C HC         L  H  +
Sbjct: 1  ERTHTGEKPF-ECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRH-LR 58

Query: 77 LHSNEKQRVIIACTLCGKK 95
          +H+ E+     AC LC  K
Sbjct: 59 VHTGERP---YACELCAAK 74


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 31.1 bits (67), Expect = 0.007
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 58  QHCPYIARNYRMLNSHQKKLH-SNEKQRVIIACTLCGKKFDDMNVYFAHK 106
           Q CPY  RN+    S ++     +E+   +  C  C +++   N    HK
Sbjct: 6   QECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHK 55


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 26  VTETVAVQNKSVSKKYA-KKH-ELIH-RPDNPLRCQHCPYIARNYRMLNSHQKKLHSNEK 82
           V  T  V  K++S K   K+H E  H +P N   C  C  + R    LN+H+   H  +K
Sbjct: 370 VCYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRRQK 429


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 17  KNVYTPEEPVTETVAVQNKSVSKKYAKKHELIHRPD 52
           KN  TP E V+  VAV  KS+ +   KK EL+   D
Sbjct: 93  KNAGTPPEAVSYNVAVPTKSILE---KKPELVDATD 125


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 17  KNVYTPEEPVTETVAVQNKSVSKK 40
           KN  TP E V+  VAV  KS+ +K
Sbjct: 93  KNAGTPPEAVSYNVAVPTKSILEK 116


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 132 HGVKRKVRGKDVFTCKICEWSSVNKVKVLLHIIHH 166
           H    + + K  F+CK CE   V+   + +HI  H
Sbjct: 5   HCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIRTH 39



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 45 HELIHRPDNPLRCQHC 60
          H   H  + P  CQHC
Sbjct: 61 HIRTHTGEKPFSCQHC 76


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 16  YKNVYTPEEPVTETVAVQNKSV 37
           Y N +TP  PVTE V   + S+
Sbjct: 292 YYNPFTPFGPVTEKVNNDSNSL 313


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 16  YKNVYTPEEPVTETVAVQNKSV 37
           Y N +TP  PVTE V   + S+
Sbjct: 292 YYNPFTPFGPVTEKVNNDSNSL 313


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 63  IARNYRMLNSHQKKLHSNEKQRV 85
           ++ NY   N++ KKL+ N  +++
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 63  IARNYRMLNSHQKKLHSNEKQRV 85
           ++ NY   N++ KKL+ N  +++
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 63  IARNYRMLNSHQKKLHSNEKQRV 85
           ++ NY   N++ KKL+ N  +++
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYRKL 107


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 73  HQKKLHSNEKQRVIIACTLC 92
           H+K LH N++  V ++  LC
Sbjct: 122 HRKFLHVNDECDVALSFKLC 141


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 109 RKQCDECGLEVC 120
           R++C EC L+ C
Sbjct: 236 RRKCQECRLKKC 247


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 141 KDVFTCKICEWSSVNKVKVLLHI 163
           K +FTC++C     +K  +  H+
Sbjct: 3   KKLFTCQLCGKVLCSKASLKRHV 25


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 109 RKQCDECGLEVC 120
           R++C EC L+ C
Sbjct: 33  RRKCQECRLKKC 44


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,713
Number of Sequences: 429
Number of extensions: 2619
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of query: 189
length of database: 140,377
effective HSP length: 54
effective length of query: 135
effective length of database: 117,211
effective search space: 15823485
effective search space used: 15823485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)