Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001628-TA|BGIBMGA001628-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR007087|Zinc finger, C2H2-type
(189 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 36 0.023
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 35 0.030
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 34 0.052
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 30 0.85
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 30 1.1
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 30 1.1
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ... 30 1.1
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 29 1.5
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 29 1.5
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 29 2.0
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 29 2.0
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 29 2.0
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 28 3.4
At4g10600.1 68417.m01734 PHD finger family protein contains Pfam... 28 3.4
At5g01860.1 68418.m00105 zinc finger (C2H2 type) family protein ... 28 4.5
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 27 6.0
At3g56330.1 68416.m06262 N2,N2-dimethylguanosine tRNA methyltran... 27 7.9
At3g48770.1 68416.m05326 hypothetical protein 27 7.9
At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein ... 27 7.9
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 35.5 bits (78), Expect = 0.023
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 56 RCQHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYF-AHKKRRKQCDE 114
+CQ +A+ RM + + + L ++ + LC K+ + + + HKKR + E
Sbjct: 1312 KCQEMREVAQKARMESENFENLLKTKQTEL----DLCMKEMEKLRMETDLHKKRVDELRE 1367
Query: 115 CGLEVCHQAMNRHKHEKHGVKRKVRGKDVFT--CKICEWSSVNKVKVLLHIIHHPEQDLS 172
+ NR K E ++ K++ KD CK NK+ +L E++L+
Sbjct: 1368 TYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLL-------EKELT 1420
Query: 173 DCSFDLSVLKK 183
+C DLS +K
Sbjct: 1421 NCKKDLSEREK 1431
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 35.1 bits (77), Expect = 0.030
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 71 NSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAMNRHKHE 130
+ H KL ++ I C C + N Y QCD E C A + H
Sbjct: 375 HGHHLKLENSRVYDENIICQACILPIYEGNYYSC----MDQCDFVLHEACANASRKKDHA 430
Query: 131 KHG--VKRKVRGKDVFTCKIC 149
HG + KV+G+D F C C
Sbjct: 431 LHGHPLTLKVQGEDSFFCSAC 451
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 34.3 bits (75), Expect = 0.052
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 66 NYRMLNSHQKKLHSNEKQRVII-ACTLCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAM 124
N+ SH KLH+ ++ AC LC +K DD Y C L Q++
Sbjct: 177 NHSYHPSHPLKLHTGQRPDYSDGACRLCARKIDDRYFYHCSSCNFTLDMRCVLHPPQQSL 236
Query: 125 NRHKHEKHGVKRKVRGKDVFTCKIC 149
K H + R D FTC C
Sbjct: 237 LNLKAHDHQLTLLPR-LDSFTCNAC 260
>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 57 CQHCPYIARNYRMLNSHQKKLHSNEKQRV-IIACTLCG 93
C HC Y A+N +N QK+ H + +V + C LCG
Sbjct: 83 CHHCHYEAKN--NINVDQKQRHDIPRHQVEQVICLLCG 118
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 38 SKKYAKKHELIHRPDNPLRC--QHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGKK 95
S KY +H+ +H D PL+C + C + + + ++H+ + + A CG+
Sbjct: 1273 SHKYLVQHQRVHSDDRPLKCPWKGCK-MTFKWAWSRTEHIRVHTGARP-YVCAEPDCGQT 1330
Query: 96 FDDMNVYFAHKKR 108
F ++ + HK++
Sbjct: 1331 FRFVSDFSRHKRK 1343
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 18/72 (25%)
Query: 89 CTLCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAMNR-----------HKHEKHGVKRK 137
C LCG++F+D K CD C +C H+H+ H + R
Sbjct: 204 CLLCGREFEDQQ---GQKYELYHCDVCNFSICISCQGNPPPLVVVTPKTHEHQLHLIPRL 260
Query: 138 VRGKDVFTCKIC 149
+ FTC C
Sbjct: 261 LD----FTCNAC 268
>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 286
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 87 IACTLCGKKFDDMNVYFAHKKR 108
I C LCGK+F M+ F H +R
Sbjct: 119 IRCCLCGKEFQTMHSLFGHMRR 140
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 89 CTLCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAMNRHKHEKHG 133
CT+CGK F HK ++ + +Q ++ + H G
Sbjct: 99 CTVCGKSFSSYQALGGHKTSHRKPTNTSITSGNQELSNNSHSNSG 143
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 17 KNVYTPEEPVTETVAVQNK-SVSKKYAKKHELIHRPDNPLRCQHCPYIARNYRMLNSHQK 75
K Y+ + V+ET +N S+ A + +++ P+R H I+++Y LN+ ++
Sbjct: 451 KQHYSSLKVVSETELCENNMSLEVVEASEDGMVYSKLEPIRIHHPAQISKDYLELNAPEQ 510
Query: 76 KLHSN 80
K+ N
Sbjct: 511 KVSLN 515
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 103 FAHKKRRKQCDECGLEVCHQAMNR 126
F K++R C CGL CH N+
Sbjct: 692 FNFKRKRHNCYNCGLVFCHSCSNK 715
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 40 KYAKKHELIHRPDNPLRC--QHCPYIARNYRMLNSHQKKLHSNEKQRVIIACTLCGKKFD 97
KY H+ +H+ + P C + C + ++ + +LH+ E+ I CG F
Sbjct: 1253 KYLVLHQRVHKDERPFECSWKGCS-MTFKWQWARTEHLRLHTGERP-YICKVDGCGLSFR 1310
Query: 98 DMNVYFAHKKR 108
++ Y H+++
Sbjct: 1311 FVSDYSRHRRK 1321
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 65 RNYRMLNSHQKKLHSNEKQRVIIACTLCGKKFDDMNVYFAHKK 107
+++R L +H K+ H ++ AC +CGK F + H+K
Sbjct: 244 KDFRTLQTHYKRKHGSKP----FACRMCGKAFAVKGDWRTHEK 282
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 103 FAHKKRRKQCDECGLEVCHQAMNR 126
F+ K++R C CGL CH ++
Sbjct: 656 FSFKRKRHNCYNCGLVFCHSCTSK 679
>At4g10600.1 68417.m01734 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 237
Score = 28.3 bits (60), Expect = 3.4
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 91 LCGKKFDDMNVYFAHKKRRKQCDECGLEVCHQAMNRHKHEKHGVKRKVRGKDVFTCKICE 150
+CG FDD K CDECG+ V H +R+ V+G D+F C C+
Sbjct: 17 VCGVNFDD-------GKEMVDCDECGVWV-HTWCSRY----------VKGDDLFVCHKCK 58
Query: 151 WSSVNKVKVLLHIIHHPE-QDLSDCSFDLSVLKKCQILP 188
+ L + ++L S + VLK C +P
Sbjct: 59 IKNNEDELSKLSVTKSLRMENLCTQSSESVVLKACSEIP 97
>At5g01860.1 68418.m00105 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 215
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 80 NEKQRVIIACTLCGKKFDDMNVYFAHKKRRKQ 111
NE + + ACT C K+F H+ KQ
Sbjct: 60 NEAKARVFACTFCKKEFSTSQALGGHQNAHKQ 91
>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 345
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 102 YFAHKKRRKQCDECGLEVCHQ----AMNRHKHEKHGVKRKVRGKDV-----FTCKICEW 151
+F HKK +C E CH + R + K G + GK + ++CKIC++
Sbjct: 45 FFVHKKCGDECSEFIEHPCHSIHTLTLVRGERIKRGTYCDLCGKSINVNLYYSCKICDF 103
>At3g56330.1 68416.m06262 N2,N2-dimethylguanosine tRNA
methyltransferase family protein low similarity to
SP|Q9P804 N(2),N(2)-dimethylguanosine tRNA
methyltransferase (EC 2.1.1.32)
(tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 433
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 69 MLNSHQKKLHSNEKQRVIIACTLCGK----KFDDMNV 101
ML H+ KLH + + C LCG +FD++ +
Sbjct: 266 MLRVHRGKLHEDRNYGFVTHCNLCGHSHTLRFDELGL 302
>At3g48770.1 68416.m05326 hypothetical protein
Length = 1899
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 80 NEKQRVIIACTLCGKKF-----DDMNVYFAHKKRRKQCDECGLEVCHQAMNRHKHEKHGV 134
+ ++R +I C CGK++ + M + A R C + EV H + K
Sbjct: 38 DSRRRKVITCGFCGKQYVGSEINRMKHHLAGLNNRSACQKVSSEVQHSMRKSLEENKEKP 97
Query: 135 KR 136
K+
Sbjct: 98 KK 99
>At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 156
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 76 KLHSNEKQRVIIACTLCGKKFDDMNVYFAHKKRRKQ 111
K H N+ + + AC C K+F H+ ++
Sbjct: 23 KAHQNDTKSRVFACKTCNKEFPSFQALGGHRASHRR 58
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,835,558
Number of Sequences: 28952
Number of extensions: 200250
Number of successful extensions: 594
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 20
length of query: 189
length of database: 12,070,560
effective HSP length: 77
effective length of query: 112
effective length of database: 9,841,256
effective search space: 1102220672
effective search space used: 1102220672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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