Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001627-TA|BGIBMGA001627-PA|undefined
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.65 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   6.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 34  GVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGG 93
           G+ D+  P   E  E+++ + LD+ D+ +    L+D     +DV+   +DE V+   +  
Sbjct: 311 GMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVK--CEDERVISIPDKE 368

Query: 94  KKRVFNTKTLKDQNG 108
                N +T+   NG
Sbjct: 369 ITVPSNEETIDINNG 383



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 64  KKVLEDIEKDNEDVEMSS 81
           KK +ED+E D+   E+S+
Sbjct: 293 KKEVEDMEYDDIKTELST 310


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 60  LKKSKKVLEDIEKDNEDVEMSSDDENVV 87
           L K++    D EK  ED+EM +  EN++
Sbjct: 495 LSKAELDKMDKEKKLEDLEMGTPLENIL 522


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 73  DNEDVEMSSDDENVVVDSEGGKKRVF-NTKTLK 104
           DN++V M + +     DS+  K ++F N + +K
Sbjct: 178 DNQEVSMENTENKSCTDSDIEKYKMFCNLENVK 210


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 7   SRWKRKCRAIKRERYAVKELA 27
           S+ KR+  + K+ER A K LA
Sbjct: 602 SKKKREKSSAKKERKATKTLA 622


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 57  AGDLKKSKKVLEDIEKDNEDVEMSSDDEN 85
           AG  K+     +D E DNE+++   +  N
Sbjct: 78  AGKPKEETDDKDDDESDNENIKSQKEFPN 106


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 69 DIEKDNEDVEMSSDDENVVVD 89
          +IE DN        +EN +VD
Sbjct: 79 EIESDNSKEVNDKKEENFIVD 99


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 71  EKDNEDVEMSSDDENVVVDSEGGK 94
           E D +D +   DD++  V++  GK
Sbjct: 388 EVDEDDDDDGDDDDDDDVEAANGK 411


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,890
Number of Sequences: 429
Number of extensions: 1411
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)