Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001627-TA|BGIBMGA001627-PA|undefined
(112 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 28 0.092
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 25 0.65
AY939827-1|AAY18208.1| 680|Anopheles gambiae CTCF-like protein ... 25 0.85
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein. 25 0.85
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 25 0.85
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 23 2.6
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. 23 3.4
DQ342048-1|ABC69940.1| 847|Anopheles gambiae STIP protein. 22 6.0
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 27.9 bits (59), Expect = 0.092
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 4 SIRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGD-LKK 62
S+ R KR+ + E A ++ R+KK+L +E SE ++ ++ + + ++K
Sbjct: 851 SVEDR-KRQLTNCRNEVVATEK--RIKKVLTDTEEVDRKLSEALKQQKTLQKELESWIQK 907
Query: 63 SKKVLEDIEKDNEDVEMSSDDENVV 87
K+ E +E+D + +E + EN++
Sbjct: 908 EKEAQEKLEEDGKRMEKWATKENML 932
Score = 27.1 bits (57), Expect = 0.16
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 8 RWKRKCRAIKRERYAVKELARLKKMLGVKD-EEKPAGSEVMESEQVIFLDAGDLKKSKKV 66
+W + R ++ Y EL +K L D + K +G + + Q I LK ++K
Sbjct: 215 KWDKARRTLEYVIYET-ELKETRKQLEELDGQRKSSGDKQLLLTQEIQKAQDRLKNAQKA 273
Query: 67 LEDIEKDNEDVEMSSDDENVV 87
L+D +K DV + D+++V+
Sbjct: 274 LKDAKK---DVVTAKDEKSVL 291
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 25.0 bits (52), Expect = 0.65
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 8 RWKRKCRA-IKRERYAV-KELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKK 65
RW K A +K ++ + +EL + K + E S++ E + DL+ SKK
Sbjct: 678 RWDEKHMAQLKLQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKK 737
Query: 66 VLEDIEKDNEDVEMSSD 82
+ + ++ ED D
Sbjct: 738 NINEYDRQLEDFTRELD 754
>AY939827-1|AAY18208.1| 680|Anopheles gambiae CTCF-like protein
protein.
Length = 680
Score = 24.6 bits (51), Expect = 0.85
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 16 IKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNE 75
+ +E A++E R KK+ +EE G E E E+ D D E+ E + +
Sbjct: 448 VSKEMEALRE-GRQKKVQITFEEEIYKGEEDYEGEE----DEED--------EEDEYEGD 494
Query: 76 DVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPV 112
D E +DE+ + G + T++D +GQY V
Sbjct: 495 DTEEDEEDEDD--ELAAGPLGTSDVVTVEDGDGQYVV 529
>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
Length = 1132
Score = 24.6 bits (51), Expect = 0.85
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 59 DLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKK 95
++KK ED E++ E+ + +DE D EGG++
Sbjct: 956 EVKKEVDAAEDDEEEEEEEQEEEEDE----DEEGGEE 988
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 24.6 bits (51), Expect = 0.85
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 10 KRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLED 69
+RK A++R A +E L++ + + +E + E+ + DA + +KK L +
Sbjct: 713 RRKVAALERYAAASREHDLLEQRIRLFEER----NNDREANFRLLEDA--YQSAKKTLAN 766
Query: 70 IEKDNEDVEMSSDDEN 85
+EK +V+ S D+N
Sbjct: 767 VEKKLAEVKAKSSDKN 782
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 23.0 bits (47), Expect = 2.6
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 11 RKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDI 70
RK + ++ + + K M+ ++ EE+ EVM ++V+ D KK + ++ D+
Sbjct: 965 RKLKKLQDSKDKMSRNVNQKAMVLLEREEEQY-KEVMRRKKVV---EDDKKKIQAIITDL 1020
Query: 71 EKDNE---DVEMSSDDEN 85
+++ + V S DEN
Sbjct: 1021 DEEKKKKLKVAWSEVDEN 1038
>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
Length = 2259
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 71 EKDNEDVEMSSDDENVVVDSEGGKKRVFN 99
E D+ED E DD++ EG + N
Sbjct: 1825 EDDDEDDEDDDDDDDDTTTGEGNEHEADN 1853
>DQ342048-1|ABC69940.1| 847|Anopheles gambiae STIP protein.
Length = 847
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 49 SEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 107
S + F+ G + KK +D + +ED + D+ N G K N+ ++
Sbjct: 69 SAPIGFIAGGIQQSGKKPEKDRKPSDEDDDDEGDEANDARPRFGSKAAAANSSATSSES 127
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.309 0.128 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,376
Number of Sequences: 2123
Number of extensions: 4054
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 112
length of database: 516,269
effective HSP length: 56
effective length of query: 56
effective length of database: 397,381
effective search space: 22253336
effective search space used: 22253336
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 43 (21.4 bits)
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