GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001626-TA|BGIBMGA001626-PA|undefined
         (235 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C244 Cluster: Chromosome undetermined scaffold_143, w...    44   0.003
UniRef50_O81495 Cluster: F9D12.15 protein; n=1; Arabidopsis thal...    36   1.2  
UniRef50_A4JYK0 Cluster: Si:dkey-24p1.1; n=3; Danio rerio|Rep: S...    34   2.7  
UniRef50_P16234 Cluster: Alpha-type platelet-derived growth fact...    33   4.7  
UniRef50_Q96RW7 Cluster: Hemicentin-1 precursor; n=40; Eumetazoa...    33   4.7  
UniRef50_Q9N4N9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q8IGN3 Cluster: RE59052p; n=3; Sophophora|Rep: RE59052p...    33   6.2  
UniRef50_Q23TC1 Cluster: Elongation factor Tu C-terminal domain ...    33   8.2  

>UniRef50_A0C244 Cluster: Chromosome undetermined scaffold_143,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_143,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 263

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 90  CTCEDCELTDVLCNGESVLASGRITVIPGKLISFNFPSFEDTNACVYLGVFKKDDRLYK 148
           C CE  EL +  C  ES    GR  +  GK ++    +  + N C+YLG F K ++ YK
Sbjct: 19  CGCE--ELNEKECEAESDWMQGRCNIEKGKCVTRKCENINNINLCIYLGCFVKKNKCYK 75


>UniRef50_O81495 Cluster: F9D12.15 protein; n=1; Arabidopsis
           thaliana|Rep: F9D12.15 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 850

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 41  PQDFGDYFAVLENEDGNEERIKALTIKLLKASRLKTASKVGDHYDTTVQCTCEDCELTDV 100
           P  F    A+LEN +  EE ++A    +   +  K+  K+ D    T+ C+  D +L D 
Sbjct: 505 PLHFKFIQAILENREKVEEIMRAFDSPITPQTEPKSIIKLEDPGKFTIPCSLGDLQLDDA 564

Query: 101 LC-NGESV 107
           LC +G SV
Sbjct: 565 LCDSGASV 572


>UniRef50_A4JYK0 Cluster: Si:dkey-24p1.1; n=3; Danio rerio|Rep:
           Si:dkey-24p1.1 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 1043

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 23  RSYSDPQKFIVLDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKLLKASRLKTASKVGD 82
           R+ ++ +  +++ L  T   D G Y    +N +G EE  K LT+  L A +  TAS  GD
Sbjct: 570 RNSTEYENKVIIFLNVTE-SDAGTYKCTAKNTEGQEETNKKLTV--LYAPKNVTASFKGD 626

Query: 83  HYDTT-VQCTCEDCELTDVLCNGESVLASGRI-TVIPGKLISFNFPSFEDTNACV 135
               + +  TCE C    V     + L +G+  T+   + + FN     D+   V
Sbjct: 627 QKSASELTLTCEACSNPPVSSYEWTKLNNGQFETLKQHQQLHFNSLEISDSGQYV 681


>UniRef50_P16234 Cluster: Alpha-type platelet-derived growth factor
           receptor precursor; n=55; Vertebrata|Rep: Alpha-type
           platelet-derived growth factor receptor precursor - Homo
           sapiens (Human)
          Length = 1089

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 34  LDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKLLKASRLKTASKVGDHYDT----TVQ 89
           L L   + +D G Y  V +NED     +K+ T +LL          V DH+ +    TV+
Sbjct: 379 LKLIRAKEEDSGHYTIVAQNEDA----VKSYTFELLTQVPSSILDLVDDHHGSTGGQTVR 434

Query: 90  CTCEDCELTDV 100
           CT E   L D+
Sbjct: 435 CTAEGTPLPDI 445


>UniRef50_Q96RW7 Cluster: Hemicentin-1 precursor; n=40; Eumetazoa|Rep:
            Hemicentin-1 precursor - Homo sapiens (Human)
          Length = 5635

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 34   LDLEGTRPQDFGDYFAVLENEDGNEERIKALTIK---LLKASRLKTASKVGDHYDTTVQC 90
            L + GT  +D GDY  V  NE G  ER  +LT++   ++    ++T    G       Q 
Sbjct: 4404 LAIYGTVNEDAGDYTCVATNEAGVVERSMSLTLQSPPIITLEPVETVINAGGKIILNCQA 4463

Query: 91   TCEDCELTDVLCNGESVLASGRITVIPGKLISFNFPSFEDTN 132
            T E          G S+    R+ V+    +       EDT+
Sbjct: 4464 TGEPQPTITWSRQGHSISWDDRVNVLSNNSLYIADAQKEDTS 4505


>UniRef50_Q9N4N9 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 485

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 22/88 (25%), Positives = 35/88 (39%)

Query: 46  DYFAVLENEDGNEERIKALTIKLLKASRLKTASKVGDHYDTTVQCTCEDCELTDVLCNGE 105
           D+    ++++ NE          L A+ L     V D +D  V     DCE    L   E
Sbjct: 144 DFLFFGDDQNNNECAFHVTDNPKLDATHLCAQGAVADMFDMIVTGNFNDCECNGGLITAE 203

Query: 106 SVLASGRITVIPGKLISFNFPSFEDTNA 133
           ++    +   + G L+  NF   ED +A
Sbjct: 204 NLHTYRKCKTLIGGLLLINFTFTEDLSA 231


>UniRef50_Q8IGN3 Cluster: RE59052p; n=3; Sophophora|Rep: RE59052p -
           Drosophila melanogaster (Fruit fly)
          Length = 949

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 6   RAVDGTVANLDPS-RYSLRSYSDPQKFIV-LDLEGTRPQDFGDYFAVLENE 54
           RA DG +  LDPS +Y + SY +  K  + L +   R  DFG Y  V  NE
Sbjct: 564 RAYDGKI--LDPSDKYGIESYPEGFKTTMRLTISNLRKDDFGYYHCVARNE 612


>UniRef50_Q23TC1 Cluster: Elongation factor Tu C-terminal domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Elongation factor Tu C-terminal domain
           containing protein - Tetrahymena thermophila SB210
          Length = 600

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 64  LTIKLLKASRLKTA-SKVGDHYDTTVQCTCEDCELT--DVLCNGESVLASGRITVIPGKL 120
           +T+K +    +K   +KVG++ D  +    EDCE+   DVLC+ E  +   RI  +    
Sbjct: 446 VTVKEINRENVKVKYAKVGENIDVHIVHK-EDCEIRSGDVLCSIEHPIPISRIFEVELSA 504

Query: 121 ISFNFPSFEDTNACVYLGVFKKDDRLYKKILA 152
              ++P  +     +Y+   K    + KKI A
Sbjct: 505 FELSYPILKGAQIVMYINTAKCPGYI-KKITA 535


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,055,723
Number of Sequences: 1657284
Number of extensions: 8363130
Number of successful extensions: 16873
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 16865
Number of HSP's gapped (non-prelim): 14
length of query: 235
length of database: 575,637,011
effective HSP length: 98
effective length of query: 137
effective length of database: 413,223,179
effective search space: 56611575523
effective search space used: 56611575523
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 71 (32.7 bits)