GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001626-TA|BGIBMGA001626-PA|undefined
         (235 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   1.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   4.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.3  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory
          receptor candidate 13 protein.
          Length = 390

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 36 LEGTRPQDFGDYFAVLENEDGNEER 60
          LEG R  D  D  +V ++E G+E+R
Sbjct: 22 LEGRRVVDCDDVSSVSQSEAGDEDR 46


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 197 IIRITEYSNAYEGVYQAVFSTSEGPVTKNILEIKL 231
           I  ITE  + YE  Y     +    V +N+L+I L
Sbjct: 42  IYTITEIYSVYERRYMNAHLSGIQLVVRNLLDISL 76


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 34  LDLEGTRPQDFGDYFAVLENEDGNEERIKALTI 66
           L +   + +D G Y  V+ N  G E     LT+
Sbjct: 292 LIIREAKVEDSGKYLCVVNNSVGGESVETVLTV 324



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 110  SGRITVIPGKLISFNFPSFEDTNACVY 136
            S ++TV P   +     SF+DT    Y
Sbjct: 1294 SKKVTVSPSASVPAKIASFDDTFTTTY 1320


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,051
Number of Sequences: 317
Number of extensions: 1790
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 114,650
effective HSP length: 55
effective length of query: 180
effective length of database: 97,215
effective search space: 17498700
effective search space used: 17498700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)