GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001626-TA|BGIBMGA001626-PA|undefined
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   0.44 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    29   0.59 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.4  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   5.5  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   9.6  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 61   IKALTIKLLKASRLKT--ASKVGDHYDTTVQCTCEDCE 96
            + A T +L+ ASR+K   ASKV DH +   +   E C+
Sbjct: 988  VSAATAQLVAASRVKANFASKVQDHLEDAAKAVTEACK 1025


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 42   QDFGDYFAVLE-NEDGNEE----RIKALTIKLLKASRLKTASKVGDH-YDTTVQCTCEDC 95
            Q + DY  +LE N D N+E     ++ +++ L + +      K   H     V   C + 
Sbjct: 1692 QIYSDYLDLLEGNFDANQELKLFTLRKISVALKELNATNLLQKAALHKISRFVNALCNEE 1751

Query: 96   ELTDVLCN 103
             LTD +CN
Sbjct: 1752 SLTDAICN 1759


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 9   DGTVANLDPSRYSLRSYSDPQKFIVLDLEGTRPQDFGDYFAVLENEDGNEERIK 62
           DG +  LD + + + +++  ++  +        Q F  Y  VLE E+  +ERI+
Sbjct: 451 DGFIGVLDIAGFEIFTFNSFEQLCINFTNEKLQQFFNHYMFVLEQEEYTQERIE 504


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 21  SLRSYSDPQ---KFIVLDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKLLKASRLKTA 77
           ++  + DP+   K + LD E  R +  G Y +  E ED +EE +      L KASR++  
Sbjct: 440 NVADFVDPEIEAKLLALDEEEERLEREGYYDSDQEIEDADEEEV------LEKASRIREK 493

Query: 78  SKV 80
           +K+
Sbjct: 494 NKL 496


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 35  DLEGTRPQDFGDYFAVLENEDGNEE 59
           DLE     D GD+ A  E E+  EE
Sbjct: 326 DLEENEEDDLGDFIAEEEEEEEQEE 350


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 981,518
Number of Sequences: 5004
Number of extensions: 36325
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 6
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)