GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001626-TA|BGIBMGA001626-PA|undefined
         (235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0098 + 31641760-31642386,31643173-31644114                       31   0.81 
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012     29   2.5  
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    28   5.7  
12_02_0779 + 23082577-23082903,23083347-23083543,23084346-230844...    27   9.9  
11_01_0192 - 1523572-1526097                                           27   9.9  
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785     27   9.9  
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346...    27   9.9  
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652...    27   9.9  

>03_06_0098 + 31641760-31642386,31643173-31644114
          Length = 522

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 54  EDGNEERIKALTIKLLKASRLKTASKVGDHYDTTVQCTCEDC 95
           ED     +K+L +KLLK +   T++ V D Y  T+  +C++C
Sbjct: 285 EDRGRREMKSLVLKLLKENSSCTSTSV-DIYAETLYSSCQNC 325


>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
          Length = 401

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 43  DFGDYFAVLENEDGNEERIKALTIKL--LKASRLKTASKVGDHYDTTVQCTCEDCELTDV 100
           D  D F +L++   N   ++ LT++L  L     K   K        V   CE+ +LT++
Sbjct: 309 DLSDNFQLLKHFLQNSPNLEKLTLRLCELPKDSKKRKGKAKAKKTRLVDIRCENLKLTEI 368

Query: 101 LCNGESVL 108
           + + + VL
Sbjct: 369 IYDADDVL 376


>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 57  NEERIKALTIKLLKASRLKTASKVGDHYDTTVQCTCEDCELTDVLCN 103
           N  R++ LT+KL K++   +   +G+   T +  TCE     +V+C+
Sbjct: 364 NSPRLQKLTLKLEKSNMRISRRIIGEL--TEISFTCEHLNTVEVICS 408


>12_02_0779 +
           23082577-23082903,23083347-23083543,23084346-23084481,
           23084558-23084794,23084885-23085108,23085434-23085551,
           23086080-23086319,23086423-23086673,23088397-23088484,
           23088576-23088727,23089670-23089811
          Length = 703

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 120 LISFNFPSFEDTNACVYLGVFKK 142
           +++++FP FED N C     F+K
Sbjct: 616 ILAYSFPGFEDVNVCYLKQPFQK 638


>11_01_0192 - 1523572-1526097
          Length = 841

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 98  TDVLCNGESVLASGRITVIPGKLISFNFPSF 128
           TD L   + ++A+G + V  GKL++  F SF
Sbjct: 161 TDTLLPTQRIVAAGEVMVSAGKLLAAGFYSF 191


>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
          Length = 382

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 7   AVDGTVANLDPSRY---SLRSYSDPQKFIVLDLE-GTRPQDFGDYF 48
           AV GTV  LDP  Y    L S SD   F VL +E  TR +  GD F
Sbjct: 216 AVQGTVGYLDPMYYYTGRLTSKSDVFSFGVLLMELLTRKKPVGDTF 261


>04_04_0027 +
           22232781-22233051,22234256-22234329,22234471-22234638,
           22234812-22234971,22235062-22235145,22235781-22236078,
           22236158-22236364,22236465-22236735,22236971-22237055,
           22237141-22237182,22237302-22237350,22237825-22237894,
           22238314-22238463,22238592-22238619,22238856-22238990,
           22240693-22241469,22242133-22242192,22242367-22242413
          Length = 991

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 11  TVANLDPSRYSLRSYSDPQKFIVLDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKLLK 70
           T  N D S+  L   + P + +  + E   P  F +     +  DG+ ++   L  K+  
Sbjct: 278 TSENGDDSKLQLVVRTPPAESLESEDEDGFPVSFSES---KKRTDGSSKKKGNLNNKMST 334

Query: 71  ASRLKTASKVGDHYD 85
             R + +S VGDH+D
Sbjct: 335 EDRKRKSSAVGDHHD 349


>03_02_0218 -
           6522330-6522458,6523257-6523328,6523555-6523707,
           6524370-6524543,6525655-6525835,6525923-6525990
          Length = 258

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 52  ENEDGNEERIKALTIKLLKASRLKTASKVGDHYDTTVQCTCEDCELTDVLCNGESVL 108
           ENE G +   + L I +L+  R  T   V           C++ +L DVLCN   +L
Sbjct: 139 ENEQGMKWSYENL-IGILRDFREATELHVNLGKGLLAPIRCQEIDLDDVLCNSSMIL 194


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,944,296
Number of Sequences: 37544
Number of extensions: 211813
Number of successful extensions: 424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 14,793,348
effective HSP length: 80
effective length of query: 155
effective length of database: 11,789,828
effective search space: 1827423340
effective search space used: 1827423340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)