GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001626-TA|BGIBMGA001626-PA|undefined
         (235 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.065
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.065
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.065
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 34   LDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKL 68
            L L   + QD GDY   +EN  GN++    LT+++
Sbjct: 1369 LMLSNLQSQDGGDYTCQVENAQGNDKLHYTLTVQV 1403



 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 197 IIRITEYSNAYEGVYQAVFSTSEGPVTKNILEIKLG 232
           ++R+   +    G+YQ +   SEG   +   E++LG
Sbjct: 383 LLRLNGINREDRGMYQCIVRRSEGDTAQASAELQLG 418


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.065
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 34   LDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKL 68
            L L   + QD GDY   +EN  GN++    LT+++
Sbjct: 1365 LMLSNLQSQDGGDYTCQVENAQGNDKLHYTLTVQV 1399



 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 197 IIRITEYSNAYEGVYQAVFSTSEGPVTKNILEIKLG 232
           ++R+   +    G+YQ +   SEG   +   E++LG
Sbjct: 383 LLRLNGINREDRGMYQCIVRRSEGDTAQASAELQLG 418


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 34  LDLEGTRPQDFGDYFAVLENEDGNEERIKALTIKLLKASRLKTASKVGD 82
           L +   R +D G Y  ++ N  G E     LT+     + ++ +++  D
Sbjct: 272 LIIREARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTID 320


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 90 CTCEDCELT 98
          CTCE C++T
Sbjct: 4  CTCEKCKIT 12


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 80  VGDHYDTTVQCTCEDCELTDVLCNGESVLASGRITVIP-GKLISFNFPSFEDTNACVYLG 138
           +G   DTT +  C+ C +         V    +IT+     + ++ F  F +       G
Sbjct: 344 LGGRTDTTYRVVCDACSMGVKYIPNTEVFNDTKITITGLNAVTTYRFQVFAENGVSALAG 403


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 118 GKLISFNFPSFEDTNACVYL 137
           G+L+S    + + TN  VY+
Sbjct: 185 GELVSLTVQAMDSTNTMVYM 204


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,676
Number of Sequences: 429
Number of extensions: 2263
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 140,377
effective HSP length: 56
effective length of query: 179
effective length of database: 116,353
effective search space: 20827187
effective search space used: 20827187
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)