GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
         (201 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   2.9  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   2.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.0  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)

Query: 64  YRCPSNRAPKEPDGSGTIMCED 85
           Y CP     K  D  GT  CED
Sbjct: 192 YGCPIGTVFKIGDADGTGNCED 213


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)

Query: 64  YRCPSNRAPKEPDGSGTIMCED 85
           Y CP     K  D  GT  CED
Sbjct: 192 YGCPIGTVFKIGDADGTGNCED 213


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 21  IAEQERRTTLYKRIMTAIQNGEK 43
           +A  +RRT +YK ++  I++ EK
Sbjct: 541 LAVLKRRTEIYKGLIDRIKSREK 563


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 168 DREVCDHWNPCQIGYIYSLPSPD 190
           D E CD +  C  G I     PD
Sbjct: 48  DAEQCDKYYECNDGQITEKLCPD 70


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short
          gastrulation protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 45 VTIAEIRNKPPLI 57
          VT+A  RNK PL+
Sbjct: 11 VTLATARNKAPLL 23


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,934
Number of Sequences: 317
Number of extensions: 2050
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 201
length of database: 114,650
effective HSP length: 54
effective length of query: 147
effective length of database: 97,532
effective search space: 14337204
effective search space used: 14337204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)