GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   5.8  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   7.7  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 91  PVMYDSCLSAEDKELYVAQNNYFFCNRQVAR 121
           P+ Y+ C++A     ++A   YFF ++ +AR
Sbjct: 470 PLEYNECVAAAQLLDHLAACGYFFFSKYIAR 500


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 173 DHWNPCQIGYIYSLPSPDQ 191
           DH +PC   Y+ +L +PDQ
Sbjct: 596 DHNSPCNTIYVGNLSNPDQ 614


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 955,203
Number of Sequences: 5004
Number of extensions: 39073
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 2,362,478
effective HSP length: 69
effective length of query: 132
effective length of database: 2,017,202
effective search space: 266270664
effective search space used: 266270664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)