Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
(201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0500 - 18120287-18122233 30 1.1
01_06_0924 - 33058194-33058697,33058798-33060147,33060234-330603... 29 2.6
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 28 4.5
06_03_0379 - 20074459-20074490,20075023-20075845 28 5.9
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 28 5.9
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568... 28 5.9
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 27 7.9
01_06_1290 - 36023353-36024096 27 7.9
>09_04_0500 - 18120287-18122233
Length = 648
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 47 IAEIRNKPPLIIRKGLMYRCPSNRAPKEPDGSGTIMCEDEIEPFPVMYDSCLSAEDKELY 106
++ IRN PL++RK M+R S+ P + + +D EP ++ CLS +
Sbjct: 81 LSSIRNDSPLLLRKNQMHR--SSSTPCLSPTAHDVQEQDHSEPIEIL--GCLSPSSRMKQ 136
Query: 107 VAQN 110
+A++
Sbjct: 137 LAKD 140
>01_06_0924 -
33058194-33058697,33058798-33060147,33060234-33060303,
33060918-33060976
Length = 660
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 33 RIMTAIQNG---EKGVTIAEIRNKPPLIIRKGLMYRCPSN-RAPKEPDGSGTIMCEDEIE 88
R MT +++ E G + + PL+ R G++ R S +AP+E G G MC +++
Sbjct: 21 RCMTELESDVVVEVGEMSFYLHKQFPLLSRSGVLQRMISEYQAPQEDGGGGGGMCTLQLD 80
Query: 89 PFP 91
P
Sbjct: 81 DIP 83
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/86 (22%), Positives = 36/86 (41%)
Query: 3 AEAKKKVDVLSEELLPYIIAEQERRTTLYKRIMTAIQNGEKGVTIAEIRNKPPLIIRKGL 62
AEA+ + +++EE + E E+ T + + + EK VT E P ++ K +
Sbjct: 1307 AEARDEKTMITEETAQDPMVEDEKTMTTEETVQEPMVEDEKTVTTEETVQDPMVVDDKTM 1366
Query: 63 MYRCPSNRAPKEPDGSGTIMCEDEIE 88
+ E G+ E+ +E
Sbjct: 1367 TTEKTVQDSMVEEGGTNIAAAEETVE 1392
>06_03_0379 - 20074459-20074490,20075023-20075845
Length = 284
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 129 KFTLTDCLGRFSHTLFEEGPAIGDCGWGMTYKFVTELDPDREVCDHWNPCQIGYIYS 185
+F L + + + P+ GDC + ++ ++L R DHWN IG Y+
Sbjct: 35 EFDLPEYREVYYKAMLSSNPSSGDCIVMLIHQPYSQLSFARVGEDHWNWIPIGLFYT 91
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 66 CPSNRAPKEPDGSGTIMCEDEIEPFPVMYDSCLSAEDKEL 105
CP P+EP + ++ C ++ P + ++ L D+ +
Sbjct: 462 CPGQYVPEEPQANASLSCPEQHVPEEIQANASLPCPDQHV 501
>03_02_0110 -
5678057-5678794,5679279-5679470,5679971-5680087,
5680331-5680402,5680444-5680569,5681086-5681445,
5681944-5682057,5682158-5682199
Length = 586
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 89 PFPVMYDSCLSAEDK--ELYVAQNNYFFCNRQVARNMRNARGKFTLTDCLGRFSH 141
PF + C A+++ E ++++ FFC+ A ++N++ C+ F H
Sbjct: 138 PFSCLCKRCFHADNQSSEQHMSEEGMFFCSLCEAEVLKNSKHCRVCDKCVDGFDH 192
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 104 ELYVAQNNYFFCNRQVARNMRNARGKFTLTDCLGRFSHTLFEEGPAIG 151
+LY + NN +ARNM+N R K + G+ + + E A G
Sbjct: 104 KLYFSWNNPLLQKMTIARNMKNLRDKIVAIEKDGKMLNLVRHEPHAKG 151
>01_06_1290 - 36023353-36024096
Length = 247
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 52 NKPPLIIRKGLMYRCPSNRAPKEPDGSGTIMCEDEIEPF 90
N P L RK L CPS + P GS + C+ E F
Sbjct: 151 NCPVLACRKNLTETCPSELQLRTPAGS-VVACKSGCEAF 188
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,229,071
Number of Sequences: 37544
Number of extensions: 259351
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 19
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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