GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_2930| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)                  28   4.6  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)                   27   8.0  

>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 148 PAIGDCGW--GMTYKFVTELD-PDREVCDHWNPCQIGYIYSLPSP 189
           P++ DCG   G   +   + D PD   CD +  C  GYIY +P P
Sbjct: 159 PSLSDCGSADGNFCRGKADGDYPDTSRCDGYVSCVSGYIYYMPCP 203


>SB_2930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 164 ELDPDREVCDHWNPCQIGYIYSLPSPDQALTANEL 198
           +++P+RE+CD    C+I  I+ L  P+  +   E+
Sbjct: 201 QVEPERELCDGTETCKIDDIHDLDVPESVVREYEI 235


>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
          Length = 1085

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/43 (37%), Positives = 18/43 (41%)

Query: 54   PPLIIRKGLMYRCPSNRAPKEPDGSGTIMCEDEIEPFPVMYDS 96
            PP     G  Y  P +RAP  P   G  + E    P PV Y S
Sbjct: 978  PPPAHFMGARYPAPYHRAPGHPFDQGPFLMEPGRFPPPVSYPS 1020


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 141 HTLFEEGPAIGDCGWGMTYKFVTELDPDREVCDHWNPCQIGYIYSLPSPDQALTANELWR 200
           HTL   GP I D  W   YK   + +  R    +W  C     Y L     A    ++WR
Sbjct: 8   HTL---GPGIQDLSWNPEYKNPGKRNGIRNPEPYWRSCHEAMTYPL-----ATRHRQIWR 59

Query: 201 E 201
           E
Sbjct: 60  E 60


>SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 14 EELLPYIIAEQERRTTLYKRIMTAIQNGEK 43
          E LL + I  +ERR  LYK ++TA+   E+
Sbjct: 10 EGLLKFKIRSRERRKHLYKNLITALVQHER 39


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 92  VMYDSCLSAEDKELYVAQNNYFFCNRQVARNMRNARGKFTLT-DCLGRFSHTLFEE 146
           +++ SCL A++++L   Q     CN Q A  +    GK T T D     S T F+E
Sbjct: 733 IVFTSCLDAQNEQLSAVQKLIRVCNPQAAFILAK-DGKVTRTPDVELILSETAFDE 787


>SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 14 EELLPYIIAEQERRTTLYKRIMTAIQNGEK 43
          E LL + I  +ERR  LYK ++TA+   E+
Sbjct: 10 EGLLKFKIRSRERRKHLYKNLITALVQHER 39


>SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)
          Length = 407

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 129 KFTLTDCLGRFSHTLFEEGPAIGDCGWGM 157
           KF L  C  R  +T+  EG    D GW M
Sbjct: 300 KFVLIGCCSRMFYTMSGEGGCDNDMGWLM 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,213,628
Number of Sequences: 59808
Number of extensions: 298219
Number of successful extensions: 480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)