GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
         (201 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    33   0.14 
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    27   9.2  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    27   9.2  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    27   9.2  

>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 136 LGRFSHTLFEEGPAIGDCGW-GMTYKFVTELDPDREVCDHWNPCQI 180
           +G +   +F  GP  G  G  G T K V+ LDPD EV    N C I
Sbjct: 637 IGFYVERVFLVGPKSGIAGQQGYTLKIVSNLDPDTEVRGETNVCVI 682


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 36  TAIQNGEKGVTIAEIRNKPPLIIRKGLMYR----CPSNRAPKEPDGSGTIMCEDEIEPFP 91
           T + N  K V + E +    +   KG + R    CPS      P G+GT      + P+P
Sbjct: 407 TPLYNEPKCVDVVEGKESSGVCKTKGGVCRFGHCCPSLTLTIAPSGNGTESATPTLGPYP 466

Query: 92  VMYDSCLSAEDKELYVAQNNYFFCNRQVAR 121
            + +    A +K +    + Y FC+    R
Sbjct: 467 YLTNYPCDA-NKPIPSQFSTYAFCDPDTNR 495


>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 55   PLIIRKGLMYRCPSNRAPKEPDGS-GTIMCEDEIEPFPVMYDSCLSAEDKEL 105
            P+++ K  M    S    KE D +  +I  E+E + FP   D  +S  +KE+
Sbjct: 1549 PMVLTKAAMKAFNSTPPKKETDQAVQSIFDEEEADEFPQYPDFGISTNEKEV 1600


>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 55   PLIIRKGLMYRCPSNRAPKEPDGS-GTIMCEDEIEPFPVMYDSCLSAEDKEL 105
            P+++ K  M    S    KE D +  +I  E+E + FP   D  +S  +KE+
Sbjct: 1549 PMVLTKAAMKAFNSTPPKKETDQAVQSIFDEEEADEFPQYPDFGISTNEKEV 1600


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   AKKKVDVLSEELLPYIIAEQERRTTLYKRIMTAIQNGEKGVTIAEIRNKPPLIIRKGLMY 64
           A+K     +++   +++ +QE   T  +  MT  Q+  + +T    RN PP +I+     
Sbjct: 89  AQKLNQQQNQQAFNFMVVKQENGET-GRNFMTMKQDALQAITNTVSRNSPPNVIKGERCV 147

Query: 65  RCPSNRA 71
            C S  A
Sbjct: 148 GCGSESA 154


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 156 GMTYKFVTELDPDREVCDHWNPCQIGYIYSLPSPDQALTANELW 199
           G  YK + +  PDR   D+ +  + G IY++   D      +LW
Sbjct: 266 GELYKAMNQAYPDRVPIDYTDDLEEGIIYAMNFEDVFKEFGDLW 309


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 156 GMTYKFVTELDPDREVCDHWNPCQIGYIYSLPSPDQALTANELW 199
           G  YK + +  PDR   D+ +  + G IY++   D      +LW
Sbjct: 300 GELYKAMNQAYPDRVPIDYTDDLEEGIIYAMNFEDVFKEFGDLW 343


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,352,017
Number of Sequences: 27539
Number of extensions: 229645
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 7
length of query: 201
length of database: 12,573,161
effective HSP length: 78
effective length of query: 123
effective length of database: 10,425,119
effective search space: 1282289637
effective search space used: 1282289637
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)