GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
         (201 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.86 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 10  DVLSEELL-PYIIA-EQERRTTLYKRIMTAIQNGEKGVTIAEIRNKPPLIIRKGLM 63
           D+ ++ L+  YII  EQ +  +LY  I+  I+N + G  IA + +    + R GL+
Sbjct: 285 DLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAYVSD----VFRYGLL 336


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 87  IEPFPVMYDSCLSAEDKELYVAQNNYFF 114
           + P  V YD+C       +Y+ + + FF
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFF 366


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 67  PSNRAPK--EPDGSGTIMCEDEIEPFPVMYDSCLSAEDKELYVA 108
           P++  PK  +  G+  +  E++ EPF  + D  +SA  KEL ++
Sbjct: 98  PADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGIS 141


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 94  YDSCLSAEDKELYVA 108
           +  C+   DKELY+A
Sbjct: 131 FGKCIYENDKELYLA 145


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 94  YDSCLSAEDKELYVA 108
           +  C+   DKELY+A
Sbjct: 105 FGKCIYENDKELYLA 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,639
Number of Sequences: 429
Number of extensions: 2840
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 201
length of database: 140,377
effective HSP length: 55
effective length of query: 146
effective length of database: 116,782
effective search space: 17050172
effective search space used: 17050172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)