GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001625-TA|BGIBMGA001625-PA|undefined
         (201 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    29   1.6  
At1g53890.1 68414.m06135 expressed protein contains Pfam profile...    29   2.8  
At1g53870.2 68414.m06132 expressed protein contains Pfam profile...    29   2.8  
At1g53870.1 68414.m06131 expressed protein contains Pfam profile...    29   2.8  
At5g62810.1 68418.m07884 peroxisomal protein (PEX14) identical t...    28   3.8  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    28   5.0  

>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 97  CLSAE-DKELYVAQNNYFFCNRQVARNMRNARGKFTLTDCLG 137
           CL  E +K++YV +   + C   +  + R   G F +T+C G
Sbjct: 207 CLLRETEKDVYVVECERWHCKWSICASRREEDGLFEITECSG 248


>At1g53890.1 68414.m06135 expressed protein contains Pfam profile
          PF04525: Protein of unknown function (DUF567)
          Length = 217

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 9  VDVLSEELLPYIIAEQERRTTLYKRIM 35
          +DV+ +++LPY+  EQER T   K ++
Sbjct: 26 MDVVQDKILPYLTTEQERFTIWMKSLV 52


>At1g53870.2 68414.m06132 expressed protein contains Pfam profile
          PF04525: Protein of unknown function (DUF567)
          Length = 202

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 9  VDVLSEELLPYIIAEQERRTTLYKRIM 35
          +DV+ +++LPY+  EQER T   K ++
Sbjct: 26 MDVVQDKILPYLTTEQERFTIWMKSLV 52


>At1g53870.1 68414.m06131 expressed protein contains Pfam profile
          PF04525: Protein of unknown function (DUF567)
          Length = 217

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 9  VDVLSEELLPYIIAEQERRTTLYKRIM 35
          +DV+ +++LPY+  EQER T   K ++
Sbjct: 26 MDVVQDKILPYLTTEQERFTIWMKSLV 52


>At5g62810.1 68418.m07884 peroxisomal protein (PEX14) identical to
           PEX14 [Arabidopsis thaliana] GI:11094252; contains Pfam
           profile PF04695: Peroxisomal membrane anchor protein
           (Pex14p) conserved region; supporting cDNA
           gi|11094253|dbj|AB037539.1|
          Length = 507

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 31  YKRIMTAIQNGEKGVTIAEIRNKPP 55
           Y  IM+ IQ GEK   I EI + PP
Sbjct: 329 YMDIMSMIQRGEKPSNIREINDMPP 353


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 99  SAEDKELYVAQ-NNYFFCNRQVARNMRNARGK 129
           S+  K  Y+ Q N+++FC+ +   N RN RG+
Sbjct: 648 SSRCKLPYILQINDFYFCSNKCCGNTRNPRGR 679


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,087,495
Number of Sequences: 28952
Number of extensions: 215066
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 12,070,560
effective HSP length: 78
effective length of query: 123
effective length of database: 9,812,304
effective search space: 1206913392
effective search space used: 1206913392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)